RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 C10orf88Q9H8K7 445 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 PCDH12Q9NPG4 1184 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 TMEM74BQ9NUR3 256 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 RAXQ9Y2V3 346 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 ZNF462Q96JM2 2506 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 PTPRBP23467 1997 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 LOC285095A0A1B0GVY8 99 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 FAM47DPA6NHR8 397 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 PLK4O00444 970 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 IFNB1P01574 187 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 GNSP15586 552 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 ZNF30P17039 623 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 COILP38432 576 aaPredicted RBP20.65■□□□□ 0.9
VPS53-210ENST00000571456 GDF10P55107 478 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 AGERQ15109 404 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 TMEM259Q4ZIN3 620 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 PEAR1Q5VY43 1037 aaPredicted RBP20.65■□□□□ 0.9
VPS53-210ENST00000571456 CCDC137Q6PK04 289 aaKnown RBP20.65■□□□□ 0.9
VPS53-210ENST00000571456 KDELC1Q6UW63 502 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 CCNI2Q6ZMN8 369 aaPredicted RBP20.65■□□□□ 0.9
VPS53-210ENST00000571456 ZSWIM9Q86XI8 627 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 CEP76Q8TAP6 659 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 CCHCR1Q8TD31 782 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 BIRC7Q96CA5 298 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 TRIB3Q96RU7 358 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 AP1M1Q9BXS5 423 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 CHKBQ9Y259 395 aa20.65■□□□□ 0.9
VPS53-210ENST00000571456 A0A1W2PPC4 97 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 CAPN8A6NHC0 703 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 FANCGO15287 622 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 FSBPO95073 299 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 MT-CYBP00156 380 aaPredicted RBP20.64■□□□□ 0.89
VPS53-210ENST00000571456 PRLP01236 227 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 IGHV4-34P06331 123 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 PSMB4P28070 264 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 VIPR1P32241 457 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 WNT3AP56704 352 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 SGCGQ13326 291 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 ARMCX6Q7L4S7 300 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 LINC00523Q86TU6 105 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 SLC41A1Q8IVJ1 513 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.64■□□□□ 0.89
VPS53-210ENST00000571456 DENND6BQ8NEG7 585 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 SPATA22Q8NHS9 363 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 MDM1Q8TC05 714 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 ADAMTS14Q8WXS8 1223 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 SLCO2A1Q92959 643 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 CAPZA3Q96KX2 299 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 MLPHQ9BV36 600 aaPredicted RBP20.64■□□□□ 0.89
VPS53-210ENST00000571456 GTPBP2Q9BX10 602 aaKnown RBP20.64■□□□□ 0.89
VPS53-210ENST00000571456 TRABDQ9H4I3 376 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 LRRC40Q9H9A6 602 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 HACD3Q9P035 362 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 PCYOX1Q9UHG3 505 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 MYO18BQ8IUG5 2567 aa20.64■□□□□ 0.89
VPS53-210ENST00000571456 A0A1W2PQU0 124 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 PMPCBO75439 489 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 TM7SF2O76062 418 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 CFIP05156 583 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 FGF1P05230 155 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 PDHA1P08559 390 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 PTGER3P43115 390 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 CKAP4Q07065 602 aaKnown RBP20.63■□□□□ 0.89
VPS53-210ENST00000571456 ARHGEF7Q14155 803 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 IHHQ14623 411 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 NAPEPLDQ6IQ20 393 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 SYDE1Q6ZW31 735 aaPredicted RBP20.63■□□□□ 0.89
VPS53-210ENST00000571456 RGL4Q8IZJ4 473 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 LPCAT1Q8NF37 534 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 KIF18AQ8NI77 898 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 SKA1Q96BD8 255 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 OXNAD1Q96HP4 312 aaPredicted RBP20.63■□□□□ 0.89
VPS53-210ENST00000571456 MRGPRX2Q96LB1 330 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 C1QTNF2Q9BXJ5 285 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 MAGEE1Q9HCI5 957 aa20.63■□□□□ 0.89
VPS53-210ENST00000571456 PRAMEF26H0Y7S4 382 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 AP3B1O00203 1094 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 SPINT1O43278 529 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 ELFN1P0C7U0 828 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 OVGP1Q12889 678 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 PCSK7Q16549 785 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 ZNF284Q2VY69 593 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 IPMKQ8NFU5 416 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 LENG8Q96PV6 779 aaPredicted RBP20.62■□□□□ 0.89
VPS53-210ENST00000571456 SLC17A9Q9BYT1 436 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 B4GALT6Q9UBX8 382 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 CDC23Q9UJX2 597 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 PILRBQ9UKJ0 227 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 SLC6A14Q9UN76 642 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 PCDH15Q96QU1 1955 aa20.62■□□□□ 0.89
VPS53-210ENST00000571456 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.61■□□□□ 0.89
VPS53-210ENST00000571456 RGSL1A5PLK6 1076 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 TOR1BO14657 336 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 MAGEC1O60732 1142 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 ECEL1O95672 775 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 AP2A1O95782 977 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 HNRNPA2B1P22626 353 aaKnown RBP20.61■□□□□ 0.89
VPS53-210ENST00000571456 AKT2P31751 481 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 KCNJ1P48048 391 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 RACK1P63244 317 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms