RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 POLR1CO15160 346 aaPredicted RBP16.19■□□□□ 0.18
CLK3-223ENST00000568488 SMC2O95347 1197 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 CLDN1O95832 211 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 PDGFAP04085 211 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FURINP09958 794 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 ELFN1P0C7U0 828 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 GPLD1P80108 840 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 APBA1Q02410 837 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 CYTH1Q15438 398 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 INO80DQ53TQ3 878 aaPredicted RBP16.19■□□□□ 0.18
CLK3-223ENST00000568488 FAM72AQ5TYM5 149 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FAM72DQ6L9T8 149 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FAM72BQ86X60 149 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 ZSWIM9Q86XI8 627 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 TICAM1Q8IUC6 712 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 PELI3Q8N2H9 469 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 ESX1Q8N693 406 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 SMARCE1Q969G3 411 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FAM81BQ96LP2 452 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 SLC38A3Q99624 504 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 MAGEB5Q9BZ81 275 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 SCAND2PQ9GZW5 306 aaPredicted RBP16.19■□□□□ 0.18
CLK3-223ENST00000568488 KLC2Q9H0B6 622 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FBXO8Q9NRD0 319 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 LHX3Q9UBR4 397 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 ESPL1Q14674 2120 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FBN2P35556 2912 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 TSPAN11A1L157 253 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 CDC14CA4D256 554 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 INPP4BO15327 924 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 FUCA1P04066 466 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 SLC9A1P19634 815 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 ADRA1BP35368 520 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 CTBSQ01459 385 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 PEX6Q13608 980 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 GRM3Q14832 879 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 ACOX1Q15067 660 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 CDO1Q16878 200 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 RAB6CQ53S08 254 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 C2CD6Q53TS8 623 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 TRNP1Q6NT89 227 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 BRAT1Q6PJG6 821 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 LIPIQ6XZB0 460 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 TMEM135Q86UB9 458 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 SLC47A2Q86VL8 602 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 DNAAF5Q86Y56 855 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 OR10G6Q8NH81 332 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 TBC1D31Q96DN5 1066 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 RAB6CQ9H0N0 254 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 RETREG1Q9H6L5 497 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 TRNAU1APQ9NX07 287 aaKnown RBP16.18■□□□□ 0.18
CLK3-223ENST00000568488 MAP10Q9P2G4 905 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 PDP2Q9P2J9 529 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 KLHL3Q9UH77 587 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 SUFUQ9UMX1 484 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 MAP4K5Q9Y4K4 846 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 OAS3Q9Y6K5 1087 aaKnown RBP16.18■□□□□ 0.18
CLK3-223ENST00000568488 MED13Q9UHV7 2174 aa16.18■□□□□ 0.18
CLK3-223ENST00000568488 CFAP69A5D8W1 941 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 BUB1BO60566 1050 aaPredicted RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 DNAJB5O75953 348 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 LRIG2O94898 1065 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 DLGAP3O95886 979 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 CEACAM5P06731 702 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 MYCLP1P12525 358 aaPredicted RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 CD44P16070 742 aaKnown RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 RALGDSQ12967 914 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 MRPL49Q13405 166 aaKnown RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 NADK2Q4G0N4 442 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 MANEALQ5VSG8 457 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 TRIM65Q6PJ69 517 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 XYLT1Q86Y38 959 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 TMEM35BQ8NCS4 154 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 NCSTNQ92542 709 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 ZNF641Q96N77 438 aaPredicted RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 PHPT1Q9NRX4 125 aaPredicted RBP16.17■□□□□ 0.18
CLK3-223ENST00000568488 CROTQ9UKG9 612 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 ST14Q9Y5Y6 855 aa16.17■□□□□ 0.18
CLK3-223ENST00000568488 CSMD1Q96PZ7 3565 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 GNA14O95837 355 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 PLEKP08567 350 aaPredicted RBP16.16■□□□□ 0.18
CLK3-223ENST00000568488 ACTR1BP42025 376 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 POLD2P49005 469 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 PMS2P54278 862 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 ACTR1AP61163 376 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 NRG1Q02297 640 aaPredicted RBP16.16■□□□□ 0.18
CLK3-223ENST00000568488 TTI2Q6NXR4 508 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 BNIPLQ7Z465 357 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 ARHGAP22Q7Z5H3 698 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 CREBRFQ8IUR6 639 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 EMC1Q8N766 993 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 PTCD2Q8WV60 388 aaKnown RBP16.16■□□□□ 0.18
CLK3-223ENST00000568488 NELFBQ8WX92 580 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 SHC3Q92529 594 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 TWSG1Q9GZX9 223 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 ZNF768Q9H5H4 540 aaKnown RBP16.16■□□□□ 0.18
CLK3-223ENST00000568488 APEX2Q9UBZ4 518 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 PLEKHM1Q9Y4G2 1056 aa16.16■□□□□ 0.18
CLK3-223ENST00000568488 PIPSLA2A3N6 862 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 GOLGA6CA6NDK9 693 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms