RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NIPA2Q8N8Q9 360 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 KIAA1524Q8TCG1 905 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 LGR4Q9BXB1 951 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 TMEM168Q9H0V1 697 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 NOD2Q9HC29 1040 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 MRPL40Q9NQ50 206 aaKnown RBP18.75■□□□□ 0.59
CLN3-218ENST00000565688 PHPT1Q9NRX4 125 aaPredicted RBP18.75■□□□□ 0.59
CLN3-218ENST00000565688 ETNK2Q9NVF9 386 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 IP6K2Q9UHH9 426 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 PHTF1Q9UMS5 762 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 PCDHGA7Q9Y5G6 932 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 A0A1W2PQJ5 194 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 PRSS38A1L453 326 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 PSMD11O00231 422 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 NOBOXO60393 691 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 HEXIM1O94992 359 aaKnown RBP18.74■□□□□ 0.59
CLN3-218ENST00000565688 CYP2A6P11509 494 aaPredicted RBP18.74■□□□□ 0.59
CLN3-218ENST00000565688 TCF4P15884 667 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 MMP13P45452 471 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 TPM4P67936 248 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 ARHGEF7Q14155 803 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 CNGA3Q16281 694 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 MARC1Q5VT66 337 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 CAVIN1Q6NZI2 390 aaKnown RBP18.74■□□□□ 0.59
CLN3-218ENST00000565688 PCSK4Q6UW60 755 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 PGBD5Q8N414 524 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 TMEM159Q96B96 161 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLN3-218ENST00000565688 TEX101Q9BY14 249 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 FOXP3Q9BZS1 431 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 DPEP2Q9H4A9 486 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.74■□□□□ 0.59
CLN3-218ENST00000565688 RCOR3Q9P2K3 495 aaPredicted RBP18.74■□□□□ 0.59
CLN3-218ENST00000565688 MOSPD1Q9UJG1 213 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 ZNF462Q96JM2 2506 aa18.74■□□□□ 0.59
CLN3-218ENST00000565688 TTC24A2A3L6 582 aaPredicted RBP18.73■□□□□ 0.59
CLN3-218ENST00000565688 B4DGG1 531 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 NUDT21O43809 227 aaKnown RBP18.73■□□□□ 0.59
CLN3-218ENST00000565688 KRT10P13645 584 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 UGT1A5P35504 534 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 CFHR1Q03591 330 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 HLTFQ14527 1009 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-218ENST00000565688 IQCB1Q15051 598 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 HGSNATQ68CP4 663 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 SPECC1LQ69YQ0 1117 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 USP45Q70EL2 814 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 SPRED1Q7Z699 444 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 Q8N9G6 341 aaPredicted RBP18.73■□□□□ 0.59
CLN3-218ENST00000565688 GPBAR1Q8TDU6 330 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 IQCDQ96DY2 449 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 DTD2Q96FN9 168 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 SCRN2Q96FV2 425 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 PCDH18Q9HCL0 1135 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 LRIT1Q9P2V4 623 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 KIF26BQ2KJY2 2108 aa18.73■□□□□ 0.59
CLN3-218ENST00000565688 K7ENP7 123 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 PGLSO95336 258 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 SERPING1P05155 500 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 JMJD7P0C870 316 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 TEAD1P28347 426 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 SLC25A11Q02978 314 aaKnown RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 ILF3Q12906 894 aaKnown RBP eCLIP18.72■□□□□ 0.59
CLN3-218ENST00000565688 TRAF2Q12933 501 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 CLN3Q13286 438 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 PEX6Q13608 980 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 KRT81Q14533 505 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 ARMC12Q5T9G4 340 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 DENND2CQ68D51 928 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 INO80CQ6PI98 192 aaPredicted RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 CCDC81Q6ZN84 652 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 HEATR4Q86WZ0 1026 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 NDUFAF2Q8N183 169 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 PELI3Q8N2H9 469 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 CBARPQ8N350 705 aaPredicted RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 ZNF843Q8N446 348 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 MCCC1Q96RQ3 725 aaPredicted RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 NUP85Q9BW27 656 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 GSDMCQ9BYG8 508 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 THAP2Q9H0W7 228 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 CARS2Q9HA77 564 aaKnown RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 TRNAU1APQ9NX07 287 aaKnown RBP18.72■□□□□ 0.59
CLN3-218ENST00000565688 ANAPC7Q9UJX3 599 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 ACSL6Q9UKU0 697 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 RNF215Q9Y6U7 377 aa18.72■□□□□ 0.59
CLN3-218ENST00000565688 MYO1FO00160 1098 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 ZW10O43264 779 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 CYP1A2P05177 515 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 CEACAM5P06731 702 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 CCNB1P14635 433 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 SLC5A2P31639 672 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 ETV3P41162 512 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 MAXP61244 160 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 ZFP36L1Q07352 338 aaKnown RBP18.71■□□□□ 0.59
CLN3-218ENST00000565688 TXNRD3NBQ6F5E7 133 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 HSD11B1LQ7Z5J1 315 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 JAMLQ86YT9 394 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 TEX26Q8N6G2 289 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 CCL4L1Q8NHW4 92 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 CCNL2Q96S94 520 aaPredicted RBP18.71■□□□□ 0.59
CLN3-218ENST00000565688 FRMD8Q9BZ67 464 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms