RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FREM2Q5SZK8 3169 aa13.42□□□□□ -0.26
CLK3-216ENST00000564468 ARHGEF17Q96PE2 2063 aaPredicted RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 AKAP13Q12802 2813 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 MACROD2A1Z1Q3 448 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 GRID2IPA4D2P6 1211 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 APOC4-APOC2K7ER74 178 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 SCAMP1O15126 338 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 ARHGAP6O43182 974 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 APOC2P02655 101 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 PCCBP05166 539 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 PDHA1P08559 390 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 HOXC4P09017 264 aaPredicted RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 ATXN1LP0C7T5 689 aaKnown RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 TSHRP16473 764 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 CKMT2P17540 419 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 PTPN7P35236 360 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 CD86P42081 329 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 MARCKSL1P49006 195 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 NIPAL4Q0D2K0 466 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 EIF2B5Q13144 721 aaKnown RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 ILKQ13418 452 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 XRCC4Q13426 336 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 PRKD1Q15139 912 aaPredicted RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 ZNF542PQ5EBM4 170 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 FAXCQ5TGI0 409 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 CCDC70Q6NSX1 233 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 ESRP1Q6NXG1 681 aaKnown RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 RAB44Q7Z6P3 723 aaPredicted RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 SLCO6A1Q86UG4 719 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 SDR16C5Q8N3Y7 309 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 SLC25A45Q8N413 288 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 CNTD1Q8N815 330 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 LRRC57Q8N9N7 239 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 COQ10AQ96MF6 247 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 AGAP3Q96P47 875 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 DESI2Q9BSY9 194 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 NCKIPSDQ9NZQ3 722 aa13.41□□□□□ -0.26
CLK3-216ENST00000564468 APOBEC3BQ9UH17 382 aaKnown RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 ZFC3H1O60293 1989 aaKnown RBP13.41□□□□□ -0.26
CLK3-216ENST00000564468 GOLGA6L9A6NEM1 432 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 CAPN8A6NHC0 703 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 NPIPB15A6NHN6 443 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 GOLGA8CPA6NN73 597 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 TPP1O14773 563 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 AQP9O43315 295 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 TJP3O95049 919 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 RASGRP1O95267 797 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 TOP3BO95985 862 aaKnown RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 PTMAP06454 111 aaKnown RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 PYGLP06737 847 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 PECAM1P16284 738 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 CTPS1P17812 591 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 HNF1BP35680 557 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 TRIM23P36406 574 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 TNNT3P45378 269 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 DUSP3P51452 185 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 KIAA1024LP59773 190 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 SKOR1P84550 965 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 DAB2P98082 770 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 LLGL1Q15334 1064 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 DENND2CQ68D51 928 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 PNCKQ6P2M8 343 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 ENPP7Q6UWV6 458 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 ZC3H18Q86VM9 953 aaKnown RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 PHACTR4Q8IZ21 702 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 CBARPQ8N350 705 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 GALNT15Q8N3T1 639 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 FSTL5Q8N475 847 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 CHCHD4Q8N4Q1 142 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 ZNF548Q8NEK5 533 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 LPCAT1Q8NF37 534 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 CCHCR1Q8TD31 782 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 GLMNQ92990 594 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 HAUS1Q96CS2 278 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 DTD2Q96FN9 168 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 IMP4Q96G21 291 aaKnown RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 TEKT5Q96M29 485 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 WDR92Q96MX6 357 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 LYSMD1Q96S90 227 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 SRPK1Q96SB4 655 aaKnown RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 MLPHQ9BV36 600 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 HEMGNQ9BXL5 484 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 OSBPL8Q9BZF1 889 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 USP29Q9HBJ7 922 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 GLOD4Q9HC38 313 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 PHPT1Q9NRX4 125 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 TOR4AQ9NXH8 423 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 SAE1Q9UBE0 346 aaPredicted RBP13.4□□□□□ -0.26
CLK3-216ENST00000564468 KLQ9UEF7 1012 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 MYLKQ15746 1914 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 PLXNB3Q9ULL4 1909 aa13.4□□□□□ -0.26
CLK3-216ENST00000564468 LAMA5O15230 3695 aa13.4□□□□□ -0.27
CLK3-216ENST00000564468 ANKRD66B4E2M5 251 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 H7C0C1 242 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 TNFRSF10CO14798 259 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 FFAR2O15552 330 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 SIGLEC6O43699 453 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 HYAL3O43820 417 aaPredicted RBP13.39□□□□□ -0.27
CLK3-216ENST00000564468 RFPL3O75679 317 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 DKK1O94907 266 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms