RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 WDR48Q8TAF3 677 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 PIH1D2Q8WWB5 315 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 MCCC1Q96RQ3 725 aaPredicted RBP16.86■□□□□ 0.29
CLK3-210ENST00000563112 PPIL1Q9Y3C6 166 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 GOLGA6CA6NDK9 693 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 GOLGA6BA6NDN3 693 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 TMEM202A6NGA9 273 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 NPIPB15A6NHN6 443 aaPredicted RBP16.85■□□□□ 0.29
CLK3-210ENST00000563112 ZNF487B1APH4 448 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 CELA2BP08218 269 aaPredicted RBP16.85■□□□□ 0.29
CLK3-210ENST00000563112 GOLGA6DP0CG33 693 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 CTPS1P17812 591 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 TGM2P21980 687 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 ACTN2P35609 894 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 ETV3P41162 512 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 SLC1A1P43005 524 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 DSC2Q02487 901 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 TBX2Q13207 712 aaPredicted RBP16.85■□□□□ 0.29
CLK3-210ENST00000563112 TCEA2Q15560 299 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 ALG1LQ6GMV1 187 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 HSD11B1LQ7Z5J1 315 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 TAF8Q7Z7C8 310 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 VSIG1Q86XK7 387 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 LSMEM2Q8N112 164 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 CBARPQ8N350 705 aaPredicted RBP16.85■□□□□ 0.29
CLK3-210ENST00000563112 OR6C4Q8NGE1 309 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 HNRNPLLQ8WVV9 542 aaKnown RBP16.85■□□□□ 0.29
CLK3-210ENST00000563112 OR1E3Q8WZA6 343 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 GRAMD1AQ96CP6 724 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 HDAC11Q96DB2 347 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 DTD2Q96FN9 168 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 PDXPQ96GD0 296 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 RBM15Q96T37 977 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLK3-210ENST00000563112 CYP4F12Q9HCS2 524 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 FGF22Q9HCT0 170 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 GOLGA6AQ9NYA3 693 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 DTLQ9NZJ0 730 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 SIRPGQ9P1W8 387 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 DNPEPQ9ULA0 475 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 PCDHB1Q9Y5F3 818 aa16.85■□□□□ 0.29
CLK3-210ENST00000563112 RP1P56715 2156 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 APOL1O14791 398 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 FZD6O60353 706 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 USP12O75317 370 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 TCEA3O75764 348 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 PDHA1P08559 390 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 MYCLP1P12525 358 aaPredicted RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 ZFXP17010 805 aaPredicted RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 LHCGRP22888 699 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 SLC10A2Q12908 348 aaPredicted RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 ISXQ2M1V0 245 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 PERM1Q5SV97 790 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 LRRC38Q5VT99 294 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 RAET1GQ6H3X3 334 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 SARM1Q6SZW1 724 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 CRTC1Q6UUV9 634 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 LRRC69Q6ZNQ3 347 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 RBM44Q6ZP01 1051 aaKnown RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 Q6ZVL8 140 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 RHOT1Q8IXI2 618 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 DCBLD2Q96PD2 775 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 LGR4Q9BXB1 951 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 TEX101Q9BY14 249 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 MRPL40Q9NQ50 206 aaKnown RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 DDX56Q9NY93 547 aaKnown RBP16.84■□□□□ 0.29
CLK3-210ENST00000563112 HEY1Q9Y5J3 304 aa16.84■□□□□ 0.29
CLK3-210ENST00000563112 A0A087WV48 116 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 A0A0J9YYE9 177 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 RRP8O43159 456 aaKnown RBP16.83■□□□□ 0.28
CLK3-210ENST00000563112 SPOPO43791 374 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 BRINP1O60477 761 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 LRP4O75096 1905 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 JCHAINP01591 159 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TRBC1P01850 177 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 KRT1P04264 644 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 HLA-DQB2P05538 268 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TNNT1P13805 278 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 ZNF30P17039 623 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TEAD1P28347 426 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 MAGEA1P43355 309 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 ADAMTS20P59510 1910 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 RPL26P61254 145 aaKnown RBP16.83■□□□□ 0.28
CLK3-210ENST00000563112 PDK1Q15118 436 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TCEAL1Q15170 157 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 COL28A1Q2UY09 1125 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 NYAP1Q6ZVC0 841 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TSPAN33Q86UF1 283 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 HEATR4Q86WZ0 1026 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 RFX6Q8HWS3 928 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 FAM46DQ8NEK8 389 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 NBEAQ8NFP9 2946 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 ARRDC2Q8TBH0 407 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 LRRN4Q8WUT4 740 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 FGF11Q92914 225 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 CCDC3Q9BQI4 270 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 TDRD1Q9BXT4 1180 aaKnown RBP16.83■□□□□ 0.28
CLK3-210ENST00000563112 SYNDIG1Q9H7V2 258 aa16.83■□□□□ 0.28
CLK3-210ENST00000563112 RALYQ9UKM9 306 aaKnown RBP16.83■□□□□ 0.28
CLK3-210ENST00000563112 RPL26L1Q9UNX3 145 aaKnown RBP16.83■□□□□ 0.28
CLK3-210ENST00000563112 CHKBQ9Y259 395 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms