RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LCHNA4D1U4 455 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 PABPN1LA6NDY0 278 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 WASH3PC4AMC7 463 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 CFAP99D6REC4 459 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 E5RI56 91 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 PSMD11O00231 422 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 HDAC3O15379 428 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 FZD6O60353 706 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 MAGEC1O60732 1142 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 IPO13O94829 963 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 MLYCDO95822 493 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 CBSLP0DN79 551 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 PABPC1P11940 636 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 ENO3P13929 434 aaPredicted RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 POLR2EP19388 210 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 AOC1P19801 751 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 FDXRP22570 491 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 RPS3P23396 243 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS39-204ENST00000561818 ITGB8P26012 769 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ARNTP27540 789 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 CBSP35520 551 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 EIF2DP41214 584 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 CSKP41240 450 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 DCDC1P59894 354 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ECT2LQ008S8 904 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 RIPK1Q13546 671 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 CYTH1Q15438 398 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ZNF77Q15935 545 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 HECTD2Q5U5R9 776 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 SEL1L3Q68CR1 1132 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 MAMSTRQ6ZN01 415 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 SNX20Q7Z614 316 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 CLNKQ7Z7G1 428 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 DSG4Q86SJ6 1040 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ADAMTSL2Q86TH1 951 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ARID3BQ8IVW6 561 aaPredicted RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 UNC5BQ8IZJ1 945 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 PGBD5Q8N414 524 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 LPCAT1Q8NF37 534 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 OR6Y1Q8NGX8 325 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 LRRN4Q8WUT4 740 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 UCMAQ8WVF2 138 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 IRF7Q92985 503 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ZBTB9Q96C00 473 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ALG14Q96F25 216 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ZNF419Q96HQ0 510 aaPredicted RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 CDKN2AIPNLQ96HQ2 116 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 UBXN10Q96LJ8 280 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 RILPQ96NA2 401 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ANKRD27Q96NW4 1050 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 KLF6Q99612 283 aaPredicted RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 AARSD1Q9BTE6 412 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 CCDC28BQ9BUN5 200 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 DERL2Q9GZP9 239 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 ZFYVE1Q9HBF4 777 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 SLCO1B3Q9NPD5 702 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 SPHK2Q9NRA0 654 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 LHX3Q9UBR4 397 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 MSRAQ9UJ68 235 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 TRMT6Q9UJA5 497 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 SLC27A6Q9Y2P4 619 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 MRPS23Q9Y3D9 190 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 CAPN7Q9Y6W3 813 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 KIAA0100Q14667 2235 aaKnown RBP7.52□□□□□ -1.21
VPS39-204ENST00000561818 ANAPC1Q9H1A4 1944 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 MTCL1Q9Y4B5 1905 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 A0A0J9YYE9 177 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 WDR91A4D1P6 747 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 KLHL33A6NCF5 533 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 STX16-NPEPL1H3BU86 382 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 STX16O14662 325 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PRMT5O14744 637 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 UGT1A9O60656 530 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 KERAO60938 352 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 WFS1O76024 890 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SRP72O76094 671 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 S1PR4O95977 384 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 CHEK2O96017 543 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 GOT2P00505 430 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 TRBC1P01850 177 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 S100BP04271 92 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 FGF3P11487 239 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 ZNF37AP17032 561 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 PTPN4P29074 926 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SPAM1P38567 509 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 CHRNA4P43681 627 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PIK3CGP48736 1102 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 RPL14P50914 215 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 IL2P60568 153 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 CYP4F8P98187 520 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 TTC31Q49AM3 519 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 TECRLQ5HYJ1 363 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PITRM1Q5JRX3 1037 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 C22orf39Q6P5X5 142 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 CES3Q6UWW8 571 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 CDHR3Q6ZTQ4 885 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 TPRG1Q6ZUI0 275 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PTAR1Q7Z6K3 402 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 KIAA0907Q7Z7F0 614 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 C10orf107Q8IVU9 208 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms