RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ITKQ08881 620 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 ELOCQ15369 112 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 HADHQ16836 314 aaKnown RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 NPNTQ6UXI9 565 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 H2AFVQ71UI9 128 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 HEATR4Q86WZ0 1026 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 NRROSQ86YC3 692 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SDR16C5Q8N3Y7 309 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 FSTL5Q8N475 847 aaPredicted RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 OR8K1Q8NGG5 319 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SNIP1Q8TAD8 396 aaKnown RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SLC35G2Q8TBE7 412 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 ARRDC2Q8TBH0 407 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SPOCK2Q92563 424 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 FGF11Q92914 225 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 IQCDQ96DY2 449 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 DTD2Q96FN9 168 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 TSPY26PQ9H489 355 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 ASCL3Q9NQ33 180 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 ABHD10Q9NUJ1 306 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 RCOR3Q9P2K3 495 aaPredicted RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 PHTF1Q9UMS5 762 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 TFR2Q9UP52 801 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 DOLKQ9UPQ8 538 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 CHKBQ9Y259 395 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 DGKBQ9Y6T7 804 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SMG1Q96Q15 3661 aaKnown RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 NTN3O00634 580 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 NOBOXO60393 691 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 CEACAM5P06731 702 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 TMEM253P0C7T8 217 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 KDELR1P24390 212 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 HSPA9P38646 679 aaKnown RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 ABCG1P45844 678 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 ARMC12Q5T9G4 340 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 FOXR1Q6PIV2 292 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 TECPR1Q7Z6L1 1165 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 TRIM74Q86UV6 250 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 ARL10Q8N8L6 244 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 GPR156Q8NFN8 814 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 CTNNBL1Q8WYA6 563 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 SCAMP4Q969E2 229 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 MCCC1Q96RQ3 725 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 LGMNQ99538 433 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 ZNF670Q9BS34 389 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 CEP41Q9BYV8 373 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 BRD8Q9H0E9 1235 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 WDR26Q9H7D7 661 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 SPATS2LQ9NUQ6 558 aaKnown RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 RBM22Q9NW64 420 aaKnown RBP eCLIP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 DTLQ9NZJ0 730 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 UVRAGQ9P2Y5 699 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 TTLL3Q9Y4R7 772 aa17.73■□□□□ 0.43
HDDC3-205ENST00000559898 PCYT1BQ9Y5K3 369 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-205ENST00000559898 SCN8AQ9UQD0 1980 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 PRSS38A1L453 326 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 B4DGG1 531 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 CACNB4O00305 520 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-205ENST00000559898 MATN3O15232 486 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 MFAP3LO75121 409 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 MMP2P08253 660 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 AK4P27144 223 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-205ENST00000559898 BLKP51451 505 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 PTSQ03393 145 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 ZBTB17Q13105 803 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 LRRC66Q68CR7 880 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 TMPRSS9Q7Z410 1059 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 TAF8Q7Z7C8 310 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 GKN2Q86XP6 184 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 SPACA3Q8IXA5 215 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 PLD5Q8N7P1 536 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 Q8N9G6 341 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-205ENST00000559898 FAM46DQ8NEK8 389 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 PATE1Q8WXA2 126 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 SCRN2Q96FV2 425 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 HIC2Q96JB3 615 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 FOXP3Q9BZS1 431 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 ABCG8Q9H221 673 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 NHEJ1Q9H9Q4 299 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-205ENST00000559898 POLR1BQ9H9Y6 1135 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 ATXN7L1Q9ULK2 861 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-205ENST00000559898 PPIL1Q9Y3C6 166 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 RNF215Q9Y6U7 377 aa17.72■□□□□ 0.43
HDDC3-205ENST00000559898 SSU72P8A0A1W2PR75 194 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 GOLGA6CA6NDK9 693 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 GOLGA6BA6NDN3 693 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 KCNK1O00180 336 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 AKR1B10O60218 316 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 HOXC4P09017 264 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 GOLGA6DP0CG33 693 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 MYCLP1P12525 358 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 LSSP48449 732 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 MAZP56270 477 aaKnown RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 CDK3Q00526 305 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 COL9A2Q14055 689 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 PDK2Q15119 407 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 LLGL1Q15334 1064 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 ALG1LQ6GMV1 187 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 DOK6Q6PKX4 331 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 RBM44Q6ZP01 1051 aaKnown RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms