RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ALG2Q9H553 416 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 NT5MQ9NPB1 228 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ERAP1Q9NZ08 941 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 GSTA4O15217 222 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 PROZP22891 400 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 GLUD2P49448 558 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 TPTEP56180 551 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 KCNK10P57789 538 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 LIPEQ05469 1076 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 C1QTNF12Q5T7M4 302 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 CRTC3Q6UUV7 619 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 MOB2Q70IA6 237 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 GALNT5Q7Z7M9 940 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 HM13Q8TCT9 377 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 CAPSLQ8WWF8 208 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ZFP42Q96MM3 310 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 C1QTNF1Q9BXJ1 281 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 SPATC1LQ9H0A9 340 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ABCG8Q9H221 673 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 GBA3Q9H227 469 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 RAD21L1Q9H4I0 556 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ABCB10Q9NRK6 738 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 NOS2P35228 1153 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 OPRL1P41146 370 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 NPY2RP49146 381 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 INCA1Q0VD86 236 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 RBBP7Q16576 425 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SGO1Q5FBB7 561 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 PPP4R4Q6NUP7 873 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 PKN3Q6P5Z2 889 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 IGFN1Q86VF2 1251 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 B3GALNT2Q8NCR0 500 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 PSMA8Q8TAA3 256 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SEPT8Q92599 483 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 NDEL1Q9GZM8 345 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CASS4Q9NQ75 786 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ANAPC2Q9UJX6 822 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SNX5Q9Y5X3 404 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 I6L893 689 aaPredicted RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 UBFD1O14562 309 aaKnown RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 TSPAN1O60635 241 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 KATNA1O75449 491 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SERPINB7O75635 380 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 OXCT1P55809 520 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 TMEM236Q5W0B7 351 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 BORAQ6PGQ7 559 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SPESP1Q6UW49 350 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ADCK1Q86TW2 530 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ITIH5Q86UX2 942 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CENPNQ96H22 339 aaPredicted RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 CDK15Q96Q40 435 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CHID1Q9BWS9 393 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 LHPPQ9H008 270 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ELP3Q9H9T3 547 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SUN2Q9UH99 717 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD6Q9Y2G4 727 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ZFC3H1O60293 1989 aaKnown RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 HS6ST1O60243 411 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 BMP10O95393 424 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 S100BP04271 92 aaPredicted RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 C8BP07358 591 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 HMBSP08397 361 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 LTA4HP09960 611 aaKnown RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 PAMP19021 973 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ADSLP30566 484 aaPredicted RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 PIK3CGP48736 1102 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 KPNA2P52292 529 aaKnown RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 CLCQ05315 142 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 PCID2Q5JVF3 399 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ARMCX2Q7L311 632 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 GPRIN1Q7Z2K8 1008 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 SLCO6A1Q86UG4 719 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 FUNDC1Q8IVP5 155 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 TMEM151AQ8N4L1 468 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CPSF7Q8N684 471 aaKnown RBP11.34□□□□□ -0.59
LDLR-208ENST00000558518 BIRC8Q96P09 236 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CCDC68Q9H2F9 335 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 CMTM6Q9NX76 183 aa11.34□□□□□ -0.59
LDLR-208ENST00000558518 ADM5C9JUS6 153 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 H0Y858 1186 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 PRSS56P0CW18 603 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 PSMB9P28065 219 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 CCR1P32246 355 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 CAPGP40121 348 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 GSK3BP49841 420 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 MFSD4BQ5TF39 518 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 STRADAQ7RTN6 431 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 R3HCC1LQ7Z5L2 792 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 DNERQ8NFT8 737 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TWIST2Q8WVJ9 160 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 ACDQ96AP0 544 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 CYP2S1Q96SQ9 504 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 PRDM16Q9HAZ2 1276 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 RGS18Q9NS28 235 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 INTS7Q9NVH2 962 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 BAG5Q9UL15 447 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 AHDC1Q5TGY3 1603 aaPredicted RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 XPNPEP2O43895 674 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 OXSR1O95747 527 aaPredicted RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 AGXTP21549 392 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms