RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CDK14O94921 469 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 GOT2P00505 430 aaKnown RBP12.9□□□□□ -0.34
LDLR-207ENST00000558013 LINC00032P0C843 101 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 ATP6V1B2P21281 511 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 CLCN5P51795 746 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 TBX4P57082 545 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 RHDQ02161 417 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 STX5Q13190 355 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 SQLEQ14534 574 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 KIF19Q2TAC6 998 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 SCIMPQ6UWF3 145 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 THEM5Q8N1Q8 247 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 C19orf60Q96EN9 201 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 TUBB1Q9H4B7 451 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 MID1IP1Q9NPA3 183 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 MAP10Q9P2G4 905 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 CD300AQ9UGN4 299 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 FAM50BQ9Y247 325 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 PDLIM1O00151 329 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 PIP5K1BO14986 540 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 RBP1P09455 135 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 FAM58BPP0C7Q3 252 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 POLD2P49005 469 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 IKBKEQ14164 716 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 KIAA0408Q6ZU52 694 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 TRPC4APQ8TEL6 797 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 SLC39A13Q96H72 371 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 EXOC2Q96KP1 924 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 MTG1Q9BT17 334 aaPredicted RBP12.9□□□□□ -0.34
LDLR-207ENST00000558013 ARHGAP39Q9C0H5 1083 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 LIN28AQ9H9Z2 209 aaKnown RBP12.9□□□□□ -0.34
LDLR-207ENST00000558013 EML4Q9HC35 981 aaKnown RBP12.9□□□□□ -0.34
LDLR-207ENST00000558013 UTP6Q9NYH9 597 aaKnown RBP12.9□□□□□ -0.34
LDLR-207ENST00000558013 TIMM22Q9Y584 194 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 COMMD3-BMI1R4GMX3 469 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 A0A0D9SEW6 157 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CCDC162PA2VCL2 907 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 NCF1BA6NI72 391 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 NCF1CA8MVU1 366 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 MTHFD2P13995 350 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 AKR1A1P14550 325 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 NCF1P14598 390 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 CDKN1CP49918 316 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 CDH15P55291 814 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 DDIASQ8IXT1 998 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 UMODL1-AS1Q8N2C9 162 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 TTC16Q8NEE8 873 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 NUDT8Q8WV74 236 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 DLG3Q92796 817 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 DGCR14Q96DF8 476 aaKnown RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 SUSD3Q96L08 255 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 RANBP9Q96S59 729 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 PRDM5Q9NQX1 630 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 GALPQ9UBC7 116 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CROTQ9UKG9 612 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 SOCS2O14508 198 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 TNPO2O14787 897 aaKnown RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 WISP3O95389 354 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 GNAO1P09471 354 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CD1DP15813 335 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CAPN3P20807 821 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 GPX3P22352 226 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 PRDX3P30048 256 aaKnown RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 DIO3P55073 304 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 PLA2G4EQ3MJ16 856 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CST9Q5W186 159 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 CCDC117Q8IWD4 279 aaPredicted RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 C2orf69Q8N8R5 385 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 SERPINB11Q96P15 392 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 SLC2A11Q9BYW1 496 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 ZYG11BQ9C0D3 744 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 Q9H521 79 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 SUCOQ9UBS9 1254 aaKnown RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 CNOT6Q9ULM6 557 aaKnown RBP12.89□□□□□ -0.35
LDLR-207ENST00000558013 AURKCQ9UQB9 309 aa12.89□□□□□ -0.35
LDLR-207ENST00000558013 MIA3Q5JRA6 1907 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 A0A0J9YYE9 177 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SAC3D1A6NKF1 404 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 NME4O00746 187 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TNFAIP8O95379 198 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 CAPNS1P04632 268 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 C8BP07358 591 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SPPL2CQ8IUH8 684 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SCML4Q8N228 414 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 CALML6Q8TD86 181 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TEX37Q96LM6 180 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 RPRD1AQ96P16 312 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 SEMA4BQ9NPR2 832 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 TMEM181Q9P2C4 612 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TLR6Q9Y2C9 796 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 ZNF623O75123 536 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 DUSP11O75319 330 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 DNAJB1P25685 340 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 KPNA2P52292 529 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 INHBCP55103 352 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 HERVK_113P63132 956 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SLC14A2Q15849 920 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 RTN4RL1Q86UN2 441 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 IFNEQ86WN2 208 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms