RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 TTC24A2A3L6 582 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 CXCL11O14625 94 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ARPC2O15144 300 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 MAFKO60675 156 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ZNF12P17014 697 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 CYP2C18P33260 490 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 C21orf59P57076 290 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 UGT3A2Q3SY77 523 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ANKDD1AQ495B1 522 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 UNC50Q53HI1 259 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 RANBP10Q6VN20 620 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 TAC4Q86UU9 113 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 DDHD1Q8NEL9 900 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ZMIZ2Q8NF64 920 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 TBC1D15Q8TC07 691 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 HDAC10Q969S8 669 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 MRGPRX2Q96LB1 330 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ASB2Q96Q27 587 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 YTHDF1Q9BYJ9 559 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 MUC3BQ9H195 1237 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 MUC13Q9H3R2 512 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 RBM22Q9NW64 420 aaKnown RBP eCLIP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 CMTM6Q9NX76 183 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 SMPD3Q9NY59 655 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 GPRC5DQ9NZD1 345 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 PKD2L2Q9NZM6 624 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 VWA7Q9Y334 891 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 A0A1W2PPW3 197 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 KANSL1LA0AUZ9 987 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 RBM47A0AV96 593 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 EI24O14681 340 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ACOX3O15254 700 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 FOXD2O60548 495 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 HLA-DQB2P05538 268 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 GFAPP14136 432 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 CAPN3P20807 821 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 SLC6A2P23975 617 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ETFBP38117 255 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 SLC26A3P40879 764 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 FOXM1Q08050 763 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 GEN1Q17RS7 908 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 AARS2Q5JTZ9 985 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 TMEM26Q6ZUK4 368 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 KCTD8Q6ZWB6 473 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 FASTKD5Q7L8L6 764 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 SPNS2Q8IVW8 549 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 DDIASQ8IXT1 998 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ZNF419Q96HQ0 510 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 SIK2Q9H0K1 926 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 TMEM9Q9P0T7 183 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 ZFC3H1O60293 1989 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 MIA3Q5JRA6 1907 aa11.83□□□□□ -0.52
VIPAS39-211ENST00000557658 BOLA2-SMG1P6H3BVE0 249 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 FXYD1O00168 92 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 SUPT3HO75486 399 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 CLIC3O95833 236 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PORP16435 677 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 VARSP26640 1264 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 OXTRP30559 389 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 IREB2P48200 963 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 HERVK_113P63132 956 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 NFKB2Q00653 900 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 SPIDRQ14159 915 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 CAPRIN1Q14444 709 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 RPS6KA2Q15349 733 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 CYP51A1Q16850 503 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 COQ5Q5HYK3 327 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 GPR158Q5T848 1215 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 TIGD7Q6NT04 549 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 ANKRD23Q86SG2 305 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 OFCC1Q8IZS5 231 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PNPT1Q8TCS8 783 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 RSPH1Q8WYR4 309 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 LRRC58Q96CX6 371 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PCED1BQ96HM7 432 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PLEKHA8Q96JA3 519 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 ERVK-6Q9BXR3 956 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 SEZ6LQ9BYH1 1024 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 SPON1Q9HCB6 807 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PAIP2BQ9ULR5 123 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 DICER1Q9UPY3 1922 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 TMX2-CTNND1H3BSU7 103 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 TNPO2O14787 897 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 MATN4O95460 622 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 MMP3P08254 477 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 FGF4P08620 206 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 TFPTP0C1Z6 253 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 BAG6P46379 1132 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 RPS9P46781 194 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 PCSK7Q16549 785 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 FGD3Q5JSP0 725 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 FAM219BQ5XKK7 198 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 DLK2Q6UY11 383 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 BHLHA9Q7RTU4 235 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 GALNT7Q86SF2 657 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 ISCA2Q86U28 154 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 CNDP2Q96KP4 475 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 TUBA1CQ9BQE3 449 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 SLC39A8Q9C0K1 460 aa11.82□□□□□ -0.52
VIPAS39-211ENST00000557658 CATSPERBQ9H7T0 1116 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms