RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 RFLNAQ6ZTI6 216 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 Q6ZVL8 140 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 CCDC50Q8IVM0 306 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 RCOR2Q8IZ40 523 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 LRRC57Q8N9N7 239 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 LPCAT1Q8NF37 534 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 HAUS1Q96CS2 278 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 PDXPQ96GD0 296 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 RBM41Q96IZ5 413 aaKnown RBP20.52■□□□□ 0.88
VTI1B-205ENST00000555543 APOLD1Q96LR9 279 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 AGAP3Q96P47 875 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 HERPUD2Q9BSE4 406 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 LGR4Q9BXB1 951 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 CLPBQ9H078 707 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 PCDH9Q9HC56 1237 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 CSNK1G3Q9Y6M4 447 aa20.52■□□□□ 0.88
VTI1B-205ENST00000555543 ZZEF1O43149 2961 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 FAM149AA5PLN7 773 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 TMEM202A6NGA9 273 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 CAPN8A6NHC0 703 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 PSMD11O00231 422 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 ALPPL2P10696 532 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 ACP1P24666 158 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 HTR1BP28222 390 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 TRIM23P36406 574 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 NR2C2P49116 596 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 HK3P52790 923 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 EPHB1P54762 984 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 NAP1L1P55209 391 aaKnown RBP20.51■□□□□ 0.87
VTI1B-205ENST00000555543 KIAA1024LP59773 190 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 ARHGEF7Q14155 803 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 TCEA2Q15560 299 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 HS1BP3Q53T59 392 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 LRRC66Q68CR7 880 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 PNCKQ6P2M8 343 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 CCNI2Q6ZMN8 369 aaPredicted RBP20.51■□□□□ 0.87
VTI1B-205ENST00000555543 KIAA1328Q86T90 577 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 HID1Q8IV36 788 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 BTN2A2Q8WVV5 523 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 WDR92Q96MX6 357 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 RBM15Q96T37 977 aaKnown RBP eCLIP20.51■□□□□ 0.871e-9■■■■■ 31.5
VTI1B-205ENST00000555543 HEMGNQ9BXL5 484 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 SLC13A1Q9BZW2 595 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 BRD8Q9H0E9 1235 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 FGF22Q9HCT0 170 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 SPASTQ9UBP0 616 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.51■□□□□ 0.87
VTI1B-205ENST00000555543 PCDHA3Q9Y5H8 950 aa20.51■□□□□ 0.87
VTI1B-205ENST00000555543 GOLGA4Q13439 2230 aaKnown RBP20.5■□□□□ 0.87
VTI1B-205ENST00000555543 C1SP09871 688 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 CKMT1AP12532 417 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 TSHRP16473 764 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 CA4P22748 312 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 PTPN3P26045 913 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 SRP54P61011 504 aaKnown RBP20.5■□□□□ 0.87
VTI1B-205ENST00000555543 DAB2P98082 770 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 PPP2R5EQ16537 467 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 BBS12Q6ZW61 710 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 RD3Q7Z3Z2 195 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 TECPR1Q7Z6L1 1165 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 FAM181AQ8N9Y4 354 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 OR1E3Q8WZA6 343 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 ALG3Q92685 438 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 IMP4Q96G21 291 aaKnown RBP20.5■□□□□ 0.87
VTI1B-205ENST00000555543 CALR3Q96L12 384 aaKnown RBP20.5■□□□□ 0.87
VTI1B-205ENST00000555543 TBATAQ96M53 351 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 WDR26Q9H7D7 661 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 KLQ9UEF7 1012 aa20.5■□□□□ 0.87
VTI1B-205ENST00000555543 CACNB4O00305 520 aaPredicted RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 RASGRP1O95267 797 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 PROS1P07225 676 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 CTNNA2P26232 953 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 RPL26P61254 145 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 PTSQ03393 145 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 WASHC5Q12768 1159 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 QPCTQ16769 361 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 ZCCHC8Q6NZY4 707 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 ZC3H18Q86VM9 953 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 KIAA1524Q8TCG1 905 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 TFB1MQ8WVM0 346 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 P3H4Q92791 437 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 TADA1Q96BN2 335 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 TRIB3Q96RU7 358 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 DUSP23Q9BVJ7 150 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 MRPL40Q9NQ50 206 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 CD84Q9UIB8 345 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 RPL26L1Q9UNX3 145 aaKnown RBP20.49■□□□□ 0.87
VTI1B-205ENST00000555543 DMXL2Q8TDJ6 3036 aa20.49■□□□□ 0.87
VTI1B-205ENST00000555543 MACROD2A1Z1Q3 448 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 LMO7DNF2Z398 122 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 SOD1P00441 154 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 HOXC4P09017 264 aaPredicted RBP20.48■□□□□ 0.87
VTI1B-205ENST00000555543 ZNF30P17039 623 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 STC1P52823 247 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 ILKQ13418 452 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 GALNT3Q14435 633 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 ST3GAL2Q16842 350 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 TEX44Q53QW1 395 aa20.48■□□□□ 0.87
VTI1B-205ENST00000555543 BZW1Q7L1Q6 419 aaKnown RBP20.48■□□□□ 0.87
VTI1B-205ENST00000555543 NT5DC3Q86UY8 548 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms