RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GRIA4P48058 902 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 RPL26P61254 145 aaKnown RBP26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 CSHL1Q14406 222 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 ARMC12Q5T9G4 340 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 FBXW10Q5XX13 1052 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 TDHQ8IZJ6 230 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 DRC3Q9H069 523 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 PLK2Q9NYY3 685 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 LNPEPQ9UIQ6 1025 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 RPL26L1Q9UNX3 145 aaKnown RBP26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 K7ERQ8 282 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 TRAFD1O14545 582 aaPredicted RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 DLX3O60479 287 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 XYLBO75191 536 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 RBP1P09455 135 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 SLC8A1P32418 973 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CD70P32970 193 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 SUOXP51687 545 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CDKN2DP55273 166 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 DNAJB13P59910 316 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 TTC31Q49AM3 519 aaPredicted RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 TECRLQ5HYJ1 363 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ZNF549Q6P9A3 640 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ALYREFQ86V81 257 aaKnown RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 PDCD6IPQ8WUM4 868 aaKnown RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 HAO1Q9UJM8 370 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CLASP2O75122 1294 aaKnown RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 PGLSO95336 258 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CBX6O95503 412 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ATP5F1P24539 256 aaPredicted RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ABL2P42684 1182 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 HK2P52789 917 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 KCNJ2P63252 427 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ACAP2Q15057 778 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 MYO19Q96H55 970 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 TMEM237Q96Q45 408 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 AARSD1Q9BTE6 412 aaKnown RBP26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CDH19Q9H159 772 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 MAGEE1Q9HCI5 957 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 ZMYM5Q9UJ78 669 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CCL26Q9Y258 94 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 VPS9D1Q9Y2B5 631 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 CRYL1Q9Y2S2 319 aa26.34■■□□□ 1.81
CCDC88C-205ENST00000553403 H7C0S8 307 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 STX7O15400 261 aaKnown RBP26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 SMAD6O43541 496 aaKnown RBP26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 POU2F2P09086 479 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 CCDC166P0CW27 439 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 EPHB1P54762 984 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 PFKPQ01813 784 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 RCN2Q14257 317 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 SPATA6LQ8N4H0 392 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 EFHBQ8N7U6 833 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 PNPLA1Q8N8W4 532 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 CCDC126Q96EE4 140 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 NSL1Q96IY1 281 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 NMUR2Q9GZQ4 415 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 TDP1Q9NUW8 608 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 INTS6Q9UL03 887 aaKnown RBP26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 TRIM33Q9UPN9 1127 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 SORCS3Q9UPU3 1222 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 RAP2CQ9Y3L5 183 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 PCDHB9Q9Y5E1 797 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 ANKRD36A6QL64 1941 aa26.33■■□□□ 1.81
CCDC88C-205ENST00000553403 RANBP2P49792 3224 aaKnown RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF195O14628 629 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 GRM6O15303 877 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 SOCS5O75159 536 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 SNUPNO95149 360 aaKnown RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 PENKP01210 267 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 SERPINA6P08185 405 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 IRS1P35568 1242 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 ELF3P78545 371 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 CAMK1Q14012 370 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 PDE12Q6L8Q7 609 aaKnown RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 SLC7A6OSQ96CW6 309 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 PTCD3Q96EY7 689 aaKnown RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 RILPQ96NA2 401 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 RAB3IPQ96QF0 476 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 SMIM14Q96QK8 99 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 TM6SF2Q9BZW4 377 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 ILKAPQ9H0C8 392 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 ARL8BQ9NVJ2 186 aa26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 POLR3BQ9NW08 1133 aaPredicted RBP26.32■■□□□ 1.8
CCDC88C-205ENST00000553403 PFDN6O15212 129 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 HTRA2O43464 458 aaPredicted RBP26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 NPHS1O60500 1241 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 IGSF6O95976 241 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 EPCAMP16422 314 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 SERPINB5P36952 375 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 BCL2L1Q07817 233 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 TBCCQ15814 346 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 PITRM1Q5JRX3 1037 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 CYB5D1Q6P9G0 228 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 KIF2BQ8N4N8 673 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF557Q8N988 423 aaPredicted RBP26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 PIH1D2Q8WWB5 315 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 C19orf43Q9BQ61 176 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 EBF4Q9BQW3 602 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 EVLQ9UI08 416 aaPredicted RBP26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms