RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 UGT3A2Q3SY77 523 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 BRMS1LQ5PSV4 323 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TIGD7Q6NT04 549 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 B3GNT6Q6ZMB0 384 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ARHGAP22Q7Z5H3 698 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 METTL23Q86XA0 190 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CCDC117Q8IWD4 279 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PTCD2Q8WV60 388 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 STON2Q8WXE9 905 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 RSPH1Q8WYR4 309 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PPWD1Q96BP3 646 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 C19orf60Q96EN9 201 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF597Q96LX8 424 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 RANBP9Q96S59 729 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PARK7Q99497 189 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TMEM79Q9BSE2 394 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CAAP1Q9H8G2 361 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 AKTIPQ9H8T0 292 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 EML4Q9HC35 981 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ATP13A1Q9HD20 1204 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 RGS18Q9NS28 235 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TBC1D13Q9NVG8 400 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PTTG2Q9NZH5 202 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TMEM181Q9P2C4 612 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 UXTQ9UBK9 157 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CROTQ9UKG9 612 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SARDHQ9UL12 918 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 BTRCQ9Y297 605 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SLC45A1Q9Y2W3 748 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 DNAJC15Q9Y5T4 150 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ARL5AQ9Y689 179 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PLXNA3P51805 1871 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ARHGAP10A1A4S6 786 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 KLHL33A6NCF5 533 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SAC3D1A6NKF1 404 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 H3BMM5 538 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 M0QZ92 97 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 LDB2O43679 373 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SRP72O76094 671 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CDK14O94921 469 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 WISP3O95389 354 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 RBP1P09455 135 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 GNAO1P09471 354 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CAPN3P20807 821 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 GPX3P22352 226 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 GRK4P32298 578 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PSMD8P48556 350 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 MLLT6P55198 1093 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 USP46P62068 366 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PRAMEP78395 509 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 GALNT3Q14435 633 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PSMD5Q16401 504 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 DDR2Q16832 855 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 KIF19Q2TAC6 998 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 USP41Q3LFD5 358 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 VPS26BQ4G0F5 336 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 C8orf82Q6P1X6 216 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 KLC3Q6P597 504 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 KIAA0408Q6ZU52 694 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SPATA2LQ8IUW3 424 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 NUP93Q8N1F7 819 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 LZTR1Q8N653 840 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PTGR2Q8N8N7 351 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 OR13C4Q8NGS5 318 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 B4GALNT2Q8NHY0 566 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 EZH1Q92800 747 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 IGSF8Q969P0 613 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 MYEOVQ96EZ4 313 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SMIM14Q96QK8 99 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PRKD2Q9BZL6 878 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TUBB1Q9H4B7 451 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 VPS45Q9NRW7 570 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 DUS2Q9NX74 493 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ABI2Q9NYB9 513 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 MAP10Q9P2G4 905 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PADI3Q9ULW8 664 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 AURKCQ9UQB9 309 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CEPT1Q9Y6K0 416 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 hCG_2014768A0A024R1R8 64 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 A0A0J9YYE9 177 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 PIP5K1BO14986 540 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MUSKO15146 869 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 HNRNPRO43390 633 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 HTRA2O43464 458 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 AKAP10O43572 662 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SOAT2O75908 522 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 HMBSP08397 361 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ATXN1LP0C7T5 689 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CD1DP15813 335 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CES1P23141 567 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SLC7A1P30825 629 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 RPL9P32969 192 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MAP7Q14244 749 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SLC14A2Q15849 920 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 PFKFB4Q16877 469 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 GEN1Q17RS7 908 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 PABPC1LQ4VXU2 614 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SLC39A12Q504Y0 691 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 GNASQ5JWF2 1037 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MARC1Q5VT66 337 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms