RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PRR23BQ6ZRT6 265 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 RFLNAQ6ZTI6 216 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 CAND1Q86VP6 1230 aaKnown RBP21.2■□□□□ 0.98
VPS29-206ENST00000549578 HOOK3Q86VS8 718 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 TTC30BQ8N4P2 665 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 SERPINB12Q96P63 405 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 SRPK1Q96SB4 655 aaKnown RBP21.2■□□□□ 0.98
VPS29-206ENST00000549578 EBF2Q9HAK2 575 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 RRAGDQ9NQL2 400 aaPredicted RBP21.2■□□□□ 0.98
VPS29-206ENST00000549578 GRHL1Q9NZI5 618 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 ANAPC5Q9UJX4 755 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 ARL5AQ9Y689 179 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 SPAG17Q6Q759 2223 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 SDK1Q7Z5N4 2213 aa21.2■□□□□ 0.98
VPS29-206ENST00000549578 MEI4A8MW99 385 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 SLC31A1O15431 190 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 BUD23O43709 281 aaKnown RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 PAK4O96013 591 aaPredicted RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 ETV3P41162 512 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 SEPT6Q14141 434 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 ZC3H14Q6PJT7 736 aaKnown RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 CBARPQ8N350 705 aaPredicted RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 COQ10AQ96MF6 247 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 C1QTNF2Q9BXJ5 285 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 SLC17A9Q9BYT1 436 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 TRABDQ9H4I3 376 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.19■□□□□ 0.98
VPS29-206ENST00000549578 WHRNQ9P202 907 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 PSMD11O00231 422 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 RECQL5O94762 991 aaPredicted RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 RHOXF2BP0C7M4 288 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 MAOBP27338 520 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 DHPSP49366 369 aaPredicted RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 CRADDP78560 199 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 CALCOCO2Q13137 446 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 SGCGQ13326 291 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 ELF2Q15723 593 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 LPAL2Q16609 132 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 CCDC38Q502W7 563 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 TEX35Q5T0J7 233 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 Q6ZVL8 140 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 TMC3Q7Z5M5 1100 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 BBOF1Q8ND07 529 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 BRSK1Q8TDC3 778 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 FOXJ1Q92949 421 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 ZC3H10Q96K80 434 aaKnown RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 PWWP2AQ96N64 755 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 MYOCQ99972 504 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 RHOXF2Q9BQY4 288 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 EPB41L5Q9HCM4 733 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 XAB2Q9HCS7 855 aaKnown RBP21.19■□□□□ 0.98
VPS29-206ENST00000549578 FZD3Q9NPG1 666 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 KCTD3Q9Y597 815 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 GON4LQ3T8J9 2241 aa21.19■□□□□ 0.98
VPS29-206ENST00000549578 MUC6Q6W4X9 2439 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 SLU7O95391 586 aaKnown RBP21.18■□□□□ 0.98
VPS29-206ENST00000549578 MGAT1P26572 445 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 PTPRCAPQ14761 206 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 TAF1AQ15573 450 aaPredicted RBP21.18■□□□□ 0.98
VPS29-206ENST00000549578 SETMARQ53H47 684 aaPredicted RBP21.18■□□□□ 0.98
VPS29-206ENST00000549578 BPIFA1Q9NP55 256 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 CD84Q9UIB8 345 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 SLCO1B1Q9Y6L6 691 aa21.18■□□□□ 0.98
VPS29-206ENST00000549578 CCDC78A2IDD5 438 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 AP3B1O00203 1094 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 WNT9AO14904 365 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 RAD51BO15315 384 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 LDB2O43679 373 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 RHOBTB1O94844 696 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 CRTAMO95727 393 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 MLNP12872 115 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 HMGCLP35914 325 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 PTPN5P54829 565 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 SPDYCQ5MJ68 293 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 TECPR1Q7Z6L1 1165 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 MPP5Q8N3R9 675 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 SEC14L1Q92503 715 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 DTD2Q96FN9 168 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 ORAI3Q9BRQ5 295 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 SYBUQ9NX95 663 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 BFARQ9NZS9 450 aa21.17■□□□□ 0.98
VPS29-206ENST00000549578 EIF2B4Q9UI10 523 aaKnown RBP21.17■□□□□ 0.98
VPS29-206ENST00000549578 SCN8AQ9UQD0 1980 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 A0A1W2PPC4 97 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 C2orf81A6NN90 581 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 BHMG1C9JSJ3 638 aaPredicted RBP21.16■□□□□ 0.98
VPS29-206ENST00000549578 SMAPO00193 183 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 MAGEA3P43357 314 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 NPY2RP49146 381 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 SPINT3P49223 89 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 DRG2P55039 364 aaKnown RBP21.16■□□□□ 0.98
VPS29-206ENST00000549578 PLTPP55058 493 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 CREB5Q02930 508 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 FNBP1LQ5T0N5 605 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 LYSMD4Q5XG99 296 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 RGL4Q8IZJ4 473 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 ATOH1Q92858 354 aaPredicted RBP21.16■□□□□ 0.98
VPS29-206ENST00000549578 NUS1Q96E22 293 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 KLF6Q99612 283 aaPredicted RBP21.16■□□□□ 0.98
VPS29-206ENST00000549578 IL22Q9GZX6 179 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms