RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RAB41Q5JT25 222 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 TRILQ7L0X0 811 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 PALB2Q86YC2 1186 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 TMEM199Q8N511 208 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 NANOGP1Q8N7R0 232 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 C1orf131Q8NDD1 294 aaKnown RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 ZNF548Q8NEK5 533 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 OR14L1PQ8NHC6 308 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 ARRDC2Q8TBH0 407 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 INPP5DQ92835 1189 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 SNAPC3Q92966 411 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 JAKMIP2Q96AA8 810 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 ZFYVE19Q96K21 471 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 APOLD1Q96LR9 279 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 SERINC2Q96SA4 455 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 NCAPGQ9BPX3 1015 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 SLF1Q9BQI6 1058 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 TMEM47Q9BQJ4 181 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 IFIH1Q9BYX4 1025 aaKnown RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 TASP1Q9H6P5 420 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 PDE7BQ9NP56 450 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 DECR2Q9NUI1 292 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 NKIRAS2Q9NYR9 191 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 CHORDC1Q9UHD1 332 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 NENFQ9UMX5 172 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 R3HDM2Q9Y2K5 976 aaKnown RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 C1orf226A1L170 272 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 H0YGN5 161 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 CTDSP2O14595 271 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 LDB2O43679 373 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MTA2O94776 668 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 EPN2O95208 641 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 IFNA2P01563 188 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 TUBBP07437 444 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MMP2P08253 660 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 CYC1P08574 325 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 PRF1P14222 555 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 SCP2P22307 547 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 RRM1P23921 792 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 CAMPP49913 170 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MRPL12P52815 198 aaKnown RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 SELENOVP59797 346 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 IKQ13123 557 aaPredicted RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 DUSP6Q16828 381 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 CDONQ4KMG0 1287 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 Q5PR19 223 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 WASHC2DQ5SRD0 308 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MANEAQ5SRI9 462 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 PLEKHS1Q5SXH7 462 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 PARM1Q6UWI2 310 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MRPL10Q7Z7H8 261 aaKnown RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 TICAM1Q8IUC6 712 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 SFTPA2Q8IWL1 248 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MIGA1Q8NAN2 632 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 BEST2Q8NFU1 509 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 COQ8BQ96D53 544 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 SAT2Q96F10 170 aaPredicted RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 FEM1CQ96JP0 617 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 TMEM68Q96MH6 324 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 TRMOQ9BU70 441 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 ISCUQ9H1K1 167 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 PLK3Q9H4B4 646 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 PDZD7Q9H5P4 517 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 GPR108Q9NPR9 543 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 SIRT3Q9NTG7 399 aaPredicted RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 SETD4Q9NVD3 440 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 SUCLA2Q9P2R7 463 aaPredicted RBP4.22□□□□□ -1.73
VPS29-205ENST00000548539 HS3ST3B1Q9Y662 390 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 MAU2Q9Y6X3 613 aa4.22□□□□□ -1.73
VPS29-205ENST00000548539 TMEM202A6NGA9 273 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 I6L893 689 aaPredicted RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 VCYO14598 125 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 HS6ST1O60243 411 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 ZNF500O60304 480 aaPredicted RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 ENTPD3O75355 529 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 ERAL1O75616 437 aaKnown RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 TPPPO94811 219 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 KLKB1P03952 638 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 DNTTP04053 509 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 NNMTP40261 264 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 ALDH7A1P49419 539 aaKnown RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 PMS2P54278 862 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 MFAP4P55083 255 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 PPATQ06203 517 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 MYBPC2Q14324 1141 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 GPR18Q14330 331 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 PTGR1Q14914 329 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 NAB2Q15742 525 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 ZNF284Q2VY69 593 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 BMP2KLQ5H9B9 411 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 C6orf141Q5SZD1 244 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 LRIF1Q5T3J3 769 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 DCAF12L2Q5VW00 463 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 KRBA2Q6ZNG9 492 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 Q6ZTK2 550 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 SEPT14Q6ZU15 432 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 USP43Q70EL4 1123 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 TRAPPC11Q7Z392 1133 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 IRF2BP2Q7Z5L9 587 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 PIP4P1Q86T03 277 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms