RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ZNF711Q9Y462 761 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 FADS3Q9Y5Q0 445 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ARL5AQ9Y689 179 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 TEX264Q9Y6I9 313 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 PIKFYVEQ9Y2I7 2098 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 SPAG17Q6Q759 2223 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 SDK1Q7Z5N4 2213 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 UQCRHLA0A096LP55 91 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 C1orf232A0A0U1RR37 186 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CAPN8A6NHC0 703 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 K7ESF4 209 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CCL22O00626 93 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 AREL1O15033 823 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 LDB2O43679 373 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 S1PR4O95977 384 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 SLC4A1P02730 911 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 UQCRHP07919 91 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 C1SP09871 688 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 ACADMP11310 421 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 XPAP23025 273 aaPredicted RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 ADRA1DP25100 572 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 NMBRP28336 390 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 VIPR1P32241 457 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 MMP12P39900 470 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CXCL12P48061 93 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 MMP16P51512 607 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 TPMTP51580 245 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CLCN5P51795 746 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 PTSQ03393 145 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 DMWDQ09019 674 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 RALGDSQ12967 914 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CBLBQ13191 982 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CNGA3Q16281 694 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 DNAJC21Q5F1R6 531 aaKnown RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 PCID2Q5JVF3 399 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 LRRC66Q68CR7 880 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CASC4Q6P4E1 433 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 TSSK4Q6SA08 328 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 RFLNAQ6ZTI6 216 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 USP45Q70EL2 814 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CENPUQ71F23 418 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 GLT6D1Q7Z4J2 308 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 FRMD1Q8N878 549 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 FBXO36Q8NEA4 188 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 OR13C4Q8NGS5 318 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 BRSK1Q8TDC3 778 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 AENQ8WTP8 325 aaKnown RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 FAM131CQ96AQ9 280 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 STAMBPL1Q96FJ0 436 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CFAP36Q96G28 342 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 C9orf72Q96LT7 481 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 FCRL3Q96P31 734 aaPredicted RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 RANBP9Q96S59 729 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 LYSMD1Q96S90 227 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 EBNA1BP2Q99848 306 aaKnown RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 WRAP53Q9BUR4 548 aaKnown RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 KIFC1Q9BW19 673 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 TXLNGYQ9BZA5 131 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 FOXP3Q9BZS1 431 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 IL22Q9GZX6 179 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 BPIFA1Q9NP55 256 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 ITM2CQ9NQX7 267 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 SPATA6Q9NWH7 488 aaPredicted RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.35□□□□□ -0.91
DDX55-208ENST00000541259 BCCIPQ9P287 314 aaKnown RBP eCLIP9.35□□□□□ -0.91
DDX55-208ENST00000541259 SLC2A6Q9UGQ3 507 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 CYP8B1Q9UNU6 501 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 TCAF1Q9Y4C2 921 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 MAD1L1Q9Y6D9 718 aa9.35□□□□□ -0.91
DDX55-208ENST00000541259 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.35□□□□□ -0.91
DDX55-208ENST00000541259 BPTFQ12830 3046 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 FAM86C2PA6NEL3 165 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 MROH6A6NGR9 719 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 AP3B1O00203 1094 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 EIF3HO15372 352 aaKnown RBP eCLIP9.34□□□□□ -0.91
DDX55-208ENST00000541259 MMP20O60882 483 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 ALDH1A2O94788 518 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 APBB3O95704 486 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 CCNYL3P0C7X3 344 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 CYP2A6P11509 494 aaPredicted RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 GM2AP17900 193 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 MCM3P25205 808 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 ACSL1P33121 698 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 MAGEA9P43362 315 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 LIG3P49916 1009 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 GPX6P59796 221 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 TMPRSS15P98073 1019 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 ZBTB16Q05516 673 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 TAF1AQ15573 450 aaPredicted RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 SMAD1Q15797 465 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 KYNUQ16719 465 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 TMEM52BQ4KMG9 183 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 TSTD2Q5T7W7 516 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 ESRP1Q6NXG1 681 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 ERAP2Q6P179 960 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 LIPIQ6XZB0 460 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 CAPN12Q6ZSI9 719 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 USP30Q70CQ3 517 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 DPPA4Q7L190 304 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 HSD11B1LQ7Z5J1 315 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms