RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	APPL1	Q9UKG1	709 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SSU72P8	A0A1W2PR75	194 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CDRT15L2	A8MXV6	281 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDE2A	O00408	941 aa	Predicted RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MATN3	O15232	486 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CASC3	O15234	703 aa	Known RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CP	P00450	1065 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	H2AFZ	P0C0S5	128 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MYCLP1	P12525	358 aa	Predicted RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LHCGR	P22888	699 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCNC	P24863	283 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MAN1A1	P33908	653 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MAX	P61244	160 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TLE3	Q04726	772 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KRT81	Q14533	505 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ACOX1	Q15067	660 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NFKBIB	Q15653	356 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TSR1	Q2NL82	804 aa	Known RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ATP13A4	Q4VNC1	1196 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ANKRD20A8P	Q5CZ79	823 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	H2AFV	Q71UI9	128 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TECPR1	Q7Z6L1	1165 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	C17orf82	Q86X59	251 aa	Predicted RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KY	Q8NBH2	561 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	OR8K1	Q8NGG5	319 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NSMCE1	Q8WV22	266 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SCARF2	Q96GP6	870 aa	Predicted RBP	13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ATXN7L3B	Q96GX2	97 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RABGEF1	Q9UJ41	708 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RAI2	Q9Y5P3	530 aa		13.12	□□□□□ -0.31
SEMA4D-223	ENST00000540475	BAHCC1	Q9P281	2608 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475		A0A1W2PQM1	296 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NPIPB15	A6NHN6	443 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475		A8MX80	341 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF487	B1APH4	448 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MFSD11	O43934	449 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NOBOX	O60393	691 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FUCA1	P04066	466 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CEACAM5	P06731	702 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TPM3	P06753	285 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KRT7	P08729	469 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CYP2A6	P11509	494 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GLB1	P16278	677 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PCBP4	P57723	403 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TAS2R40	P59535	323 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	IFI16	Q16666	785 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ARMC12	Q5T9G4	340 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SPECC1L	Q69YQ0	1117 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TIGD7	Q6NT04	549 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RD3	Q7Z3Z2	195 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HSD11B1L	Q7Z5J1	315 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	VSIG1	Q86XK7	387 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CPNE8	Q86YQ8	564 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SPACA3	Q8IXA5	215 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PQLC3	Q8N755	202 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LSM14A	Q8ND56	463 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GPBAR1	Q8TDU6	330 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NUS1	Q96E22	293 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LIN37	Q96GY3	246 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DPH1	Q9BZG8	443 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	POLR1E	Q9GZS1	481 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TMEM168	Q9H0V1	697 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	WDR26	Q9H7D7	661 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MRPL40	Q9NQ50	206 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TRNAU1AP	Q9NX07	287 aa	Known RBP	13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GPR34	Q9UPC5	381 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DOLK	Q9UPQ8	538 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SATB2	Q9UPW6	733 aa		13.11	□□□□□ -0.31
SEMA4D-223	ENST00000540475		A0A0J9YYE9	177 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PRSS38	A1L453	326 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TMX2-CTNND1	H3BSU7	103 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TK2	O00142	265 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MTA2	O94776	668 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SOD1	P00441	154 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TRBC1	P01850	177 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDHA1	P08559	390 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TMEM253	P0C7T8	217 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ETV3	P41162	512 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PTS	Q03393	145 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SLC10A2	Q12908	348 aa	Predicted RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TRIM14	Q14142	442 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SPIDR	Q14159	915 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TCEAL1	Q15170	157 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CERCAM	Q5T4B2	595 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CRTC1	Q6UUV9	634 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF765	Q7L2R6	523 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CLEC14A	Q86T13	490 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MAP7D3	Q8IWC1	876 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KCTD6	Q8NC69	237 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	WDR36	Q8NI36	951 aa	Known RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ARRDC2	Q8TBH0	407 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SNRNP27	Q8WVK2	155 aa	Known RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCDC74A	Q96AQ1	378 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HDAC11	Q96DB2	347 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	UBL7	Q96S82	380 aa	Predicted RBP	13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms