RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 CNOT6Q9ULM6 557 aaKnown RBP6.73□□□□□ -1.33
USP28-207ENST00000538475 EIF3LQ9Y262 564 aaKnown RBP6.73□□□□□ -1.33
USP28-207ENST00000538475 PCDHGA7Q9Y5G6 932 aa6.73□□□□□ -1.33
USP28-207ENST00000538475 CORINQ9Y5Q5 1042 aa6.73□□□□□ -1.33
USP28-207ENST00000538475 XIRP1Q702N8 1843 aaKnown RBP6.73□□□□□ -1.33
USP28-207ENST00000538475 LTBP1Q14766 1721 aa6.73□□□□□ -1.33
USP28-207ENST00000538475 DOCK1Q14185 1865 aa6.73□□□□□ -1.33
USP28-207ENST00000538475 DLGAP1O14490 977 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TPP1O14773 563 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CFLARO15519 480 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MTRF1O75570 445 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 SRP72O76094 671 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 TGFB1P01137 390 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 S100BP04271 92 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 PRKCGP05129 697 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ZNF182P17025 639 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 TFEBP19484 476 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 RAB6AP20340 208 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ENDOUP21128 410 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 PKLRP30613 574 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 SLC16A2P36021 539 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ARCN1P48444 511 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 CDH15P55291 814 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 DNAJB13P59910 316 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 OGDHQ02218 1023 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TNK2Q07912 1038 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 NSUN2Q08J23 767 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP28-207ENST00000538475 SMUG1Q53HV7 270 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MTX3Q5HYI7 312 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CYP4A22Q5TCH4 519 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MEX3CQ5U5Q3 659 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 SLC9A4Q6AI14 798 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 HMBOX1Q6NT76 420 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 UGT3A1Q6NUS8 523 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CDPF1Q6NVV7 123 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TMEM270Q6UE05 265 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 HHIPL2Q6UWX4 724 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 SLC30A10Q6XR72 485 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 PRR23BQ6ZRT6 265 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TMEM179Q6ZVK1 233 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 KCTD1Q719H9 257 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 PIWIL4Q7Z3Z4 852 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 CDR2LQ86X02 465 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 ZC3H7AQ8IWR0 971 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 SLC7A5P1Q8MH63 180 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 PELI3Q8N2H9 469 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 FBXL6Q8N531 539 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MINDY1Q8N5J2 469 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ZNF781Q8N8C0 355 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 OSCP1Q8WVF1 389 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 SNX19Q92543 992 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 VPS33AQ96AX1 596 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 NACC2Q96BF6 587 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 PPWD1Q96BP3 646 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 AURKBQ96GD4 344 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 CEP170P1Q96L14 293 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 OR52B2Q96RD2 323 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 P2RX7Q99572 595 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 CGRRF1Q99675 332 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CIB1Q99828 191 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MXRA8Q9BRK3 442 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ZNF670Q9BS34 389 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TRAF4Q9BUZ4 470 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 SLA2Q9H6Q3 261 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 BCAS3Q9H6U6 928 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 NOL11Q9H8H0 719 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 KMT5AQ9NQR1 393 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CCDC177Q9NQR7 707 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 ANLNQ9NQW6 1124 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 XPNPEP1Q9NQW7 623 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 CNGB3Q9NQW8 809 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 C20orf96Q9NUD7 363 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 TBC1D13Q9NVG8 400 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ADA2Q9NZK5 511 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TMEM216Q9P0N5 145 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 IFT80Q9P2H3 777 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 ABCD2Q9UBJ2 740 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 GTF2IRD1Q9UHL9 959 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 SCAF8Q9UPN6 1271 aaKnown RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 VWA7Q9Y334 891 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 NDUFAF1Q9Y375 327 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 NAALAD2Q9Y3Q0 740 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 GRIP1Q9Y3R0 1128 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 MTF2Q9Y483 593 aaPredicted RBP6.72□□□□□ -1.33
USP28-207ENST00000538475 TIMM22Q9Y584 194 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 ANKRD12Q6UB98 2062 aa6.72□□□□□ -1.33
USP28-207ENST00000538475 TSC2P49815 1807 aa6.71□□□□□ -1.33
USP28-207ENST00000538475 PARP14Q460N5 1801 aa6.71□□□□□ -1.33
USP28-207ENST00000538475 PCM1Q15154 2024 aa6.71□□□□□ -1.33
USP28-207ENST00000538475 MGAMO43451 1857 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 LY75O60449 1722 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 RNF103-CHMP3A0A140T963 221 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 MYOCOSA0A1B0GUC4 107 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 DHRS12A0PJE2 317 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 ERI2A8K979 691 aaKnown RBP6.71□□□□□ -1.34
USP28-207ENST00000538475 G3V2L1 256 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 J3QRK9 145 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 SOCS2O14508 198 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 APOL1O14791 398 aa6.71□□□□□ -1.34
USP28-207ENST00000538475 SLC16A4O15374 487 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms