RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CICQ96RK0 1608 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 TRAV19A0A0A6YYK7 116 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 SLC35G4P0C7Q5 338 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ERCC2P18074 760 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 LPOP22079 712 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 HNF4AP41235 474 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ALDH3A2P51648 485 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 FCHO2Q0JRZ9 810 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 LIPMQ5VYY2 423 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PTCHD4Q6ZW05 846 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 GPR156Q8NFN8 814 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 RNF157Q96PX1 679 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 DUSP9Q99956 384 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 SEMA3CQ99985 751 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 GSDMCQ9BYG8 508 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF780BQ9Y6R6 833 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ISM1B1AKI9 464 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 PSMD11O00231 422 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CASKO14936 926 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CABYRO75952 493 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RLN1P04808 185 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RPL22P35268 128 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RAP1GAP2Q684P5 730 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 SERPINA13PQ6UXR4 307 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 IQCF2Q8IXL9 164 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 TBC1D21Q8IYX1 336 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 MCFD2Q8NI22 146 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 EPS8L1Q8TE68 723 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 KCTD4Q8WVF5 259 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 PIH1D2Q8WWB5 315 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 MARK4Q96L34 752 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 OR52E6Q96RD3 313 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RTFDC1Q9BY42 306 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 TMEM134Q9H6X4 195 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 AASDHPPTQ9NRN7 309 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 MRPL17Q9NRX2 175 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 MAT2BQ9NZL9 334 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 FAM240BA0A1B0GVZ2 78 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RNF225M0QZC1 329 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 LIASO43766 372 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 OGNP20774 298 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 ARFIP1P53367 373 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 DRG2P55039 364 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CPSF6Q16630 551 aaKnown RBP eCLIP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CES5AQ6NT32 575 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RTL4Q6ZR62 310 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 SOCS4Q8WXH5 440 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 BORCS5Q969J3 196 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 EBNA1BP2Q99848 306 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 MRTO4Q9UKD2 239 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 AP4B1Q9Y6B7 739 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 TEX46H3BTG2 121 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 BUD23O43709 281 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 KRT36O76013 467 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 HDCP19113 662 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CDH5P33151 784 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 ABL2P42684 1182 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 BMT2Q1RMZ1 405 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 PIK3R6Q5UE93 754 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 FAM46CQ5VWP2 391 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 FAAH2Q6GMR7 532 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 DEF8Q6ZN54 512 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 BBS12Q6ZW61 710 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 FAM98AQ8NCA5 519 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 TSEN2Q8NCE0 465 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 PPCDCQ96CD2 204 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 RCN3Q96D15 328 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 COPS8Q99627 209 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 ADAM2Q99965 735 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF670Q9BS34 389 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 ACSS3Q9H6R3 686 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 TRMT13Q9NUP7 481 aaKnown RBP10.65□□□□□ -0.7
CLIP1-209ENST00000537178 CKLFQ9UBR5 152 aa10.65□□□□□ -0.7
CLIP1-209ENST00000537178 GJB6O95452 261 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 FGBP02675 491 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 TNFRSF8P28908 595 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 TMPRSS11AQ6ZMR5 421 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 CHST15Q7LFX5 561 aaPredicted RBP10.65□□□□□ -0.71
CLIP1-209ENST00000537178 AMIGO2Q86SJ2 522 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 UROC1Q96N76 676 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 SNRNP25Q9BV90 132 aaKnown RBP10.65□□□□□ -0.71
CLIP1-209ENST00000537178 BHLHE41Q9C0J9 482 aaPredicted RBP10.65□□□□□ -0.71
CLIP1-209ENST00000537178 PRDM12Q9H4Q4 367 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 CCDC59Q9P031 241 aaKnown RBP10.65□□□□□ -0.71
CLIP1-209ENST00000537178 MGAT4AQ9UM21 535 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 BTRCQ9Y297 605 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.65□□□□□ -0.71
CLIP1-209ENST00000537178 RPTORQ8N122 1335 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 C1orf167Q5SNV9 1468 aa10.65□□□□□ -0.71
CLIP1-209ENST00000537178 LOC110117498-PIK3R3F6TDL0 507 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 WRBO00258 174 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TRAFD1O14545 582 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 AREL1O15033 823 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 SLC28A2O43868 658 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 NDUFS2O75306 463 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ZMPSTE24O75844 475 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ITGA2BP08514 1039 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 IL18R1Q13478 541 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms