RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 GOLGA7BQ2TAP0 167 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ZC3H12AQ5D1E8 599 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SPATA21Q7Z572 469 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 IQCHQ86VS3 1027 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 RFX6Q8HWS3 928 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 MMAAQ8IVH4 418 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 MFN1Q8IWA4 741 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 KCTD6Q8NC69 237 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 RXFP2Q8WXD0 754 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 EDEM1Q92611 657 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SGSM3Q96HU1 749 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 LGMNQ99538 433 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 KLF6Q99612 283 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 DDX50Q9BQ39 737 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TRABDQ9H4I3 376 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TSPAN16Q9UKR8 245 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 GOLGA8RI6L899 631 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 MSI1O43347 362 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 MED7O43513 233 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 LATO43561 262 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 TYROBPO43914 113 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 KRT7P08729 469 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 RBP3P10745 1247 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 SLC6A4P31645 630 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PSMD8P48556 350 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 EIF3EP60228 445 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ELF3P78545 371 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ATP11AP98196 1134 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ADIGQ0VDE8 80 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 BST2Q10589 180 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 OVGP1Q12889 678 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 EFHC2Q5JST6 749 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PMF1Q6P1K2 205 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 RFWD3Q6PCD5 774 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D1Q86TI0 1168 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PRPF39Q86UA1 669 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 TDRPQ86YL5 185 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 LSMEM2Q8N112 164 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 KIF2BQ8N4N8 673 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 AADATQ8N5Z0 425 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FBXO36Q8NEA4 188 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 MZB1Q8WU39 189 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 KCTD13Q8WZ19 329 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 MAGEB18Q96M61 343 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FAM129BQ96TA1 746 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 TRIM56Q9BRZ2 755 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FOXP3Q9BZS1 431 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CNGB3Q9NQW8 809 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 INTS6Q9UL03 887 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 DMTF1Q9Y222 760 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 WDFY3Q8IZQ1 3526 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ARID1BQ8NFD5 2236 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 TYW5A2RUC4 315 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 YJEFN3A6XGL0 299 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 E7ENQ6 273 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 APOC4-APOC2K7ER74 178 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 DXOO77932 396 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ENDOD1O94919 500 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 APOC2P02655 101 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 KRT15P19012 456 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 MNAT1P51948 309 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ZNF143P52747 638 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CDH6P55285 790 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 DAOAP59103 153 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 BASP1P80723 227 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 DPYSL3Q14195 570 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PITRM1Q5JRX3 1037 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FAXCQ5TGI0 409 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CDCP2Q5VXM1 449 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ARHGEF18Q6ZSZ5 1173 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 C3orf62Q6ZUJ4 267 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CENPUQ71F23 418 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CCDC117Q8IWD4 279 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PPIL6Q8IXY8 311 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 SIX6OS1Q8N1H7 587 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 OR14C36Q8NHC7 312 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CCHCR1Q8TD31 782 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FBF1Q8TES7 1133 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CLEC4CQ8WTT0 213 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FAM131CQ96AQ9 280 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 HIC2Q96JB3 615 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 NSRP1Q9H0G5 558 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CLMPQ9H6B4 373 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 PLAC1Q9HBJ0 212 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 NKIRAS1Q9NYS0 192 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 HESX1Q9UBX0 185 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 XPO7Q9UIA9 1087 aaKnown RBP8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CHMP2BQ9UQN3 213 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 EFR3BQ9Y2G0 817 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 ACTL7BQ9Y614 415 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 FREM2Q5SZK8 3169 aa8.31□□□□□ -1.08
NEDD8-207ENST00000533242 CYSRT1A8MQ03 144 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 A8MUI8 341 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TTC34A8MYJ7 566 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 E7ESA3 106 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SLC7A4O43246 635 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 MGRN1O60291 552 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SETSIPP0DME0 302 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 VDRP11473 427 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms