RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SNX9	Q9Y5X1	595 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SCN5A	Q14524	2016 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	KDM3A	Q9Y4C1	1321 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SAA2-SAA4	A0A096LPE2	208 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	LRRC53	A6NM62	1247 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	SOCS6	O14544	535 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	TIPRL	O75663	272 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	KDM4B	O94953	1096 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	CLDN14	O95500	239 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	BDNF	P23560	247 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	EPHA8	P29322	1005 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-223	ENST00000526553	ILF3	Q12906	894 aa	Known RBP eCLIP	4.7	□□□□□ -1.66
CD44-223	ENST00000526553	TNFAIP1	Q13829	316 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	GSTA3	Q16772	222 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	RSRC2	Q7L4I2	434 aa	Known RBP	4.7	□□□□□ -1.66
CD44-223	ENST00000526553	MAATS1	Q7Z4T9	603 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	DSEL	Q8IZU8	1212 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	MAGEC3	Q8TD91	643 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	PABPC5	Q96DU9	382 aa	Known RBP	4.7	□□□□□ -1.66
CD44-223	ENST00000526553	RRP36	Q96EU6	259 aa	Known RBP	4.7	□□□□□ -1.66
CD44-223	ENST00000526553	SLC41A2	Q96JW4	573 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	IL17F	Q96PD4	163 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	SH3GL2	Q99962	352 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	TKTL2	Q9H0I9	626 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	C1RL	Q9NZP8	487 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	MALT1	Q9UDY8	824 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	TINAG	Q9UJW2	476 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	ITIH6	Q6UXX5	1313 aa		4.7	□□□□□ -1.66
CD44-223	ENST00000526553	IFNL4	K9M1U5	179 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	LDB3	O75112	727 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	AFP	P02771	609 aa	Known RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	CYC1	P08574	325 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	CTCF	P49711	727 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	METAP2	P50579	478 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	SEC61B	P60468	96 aa	Known RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	ZNF155	Q12901	538 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	KRT24	Q2M2I5	525 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	C2orf68	Q2NKX9	166 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	PAPPA-AS1	Q5QFB9	102 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	METTL2B	Q6P1Q9	378 aa	Known RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	QSOX2	Q6ZRP7	698 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	TAOK1	Q7L7X3	1001 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	TICAM2	Q86XR7	235 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	FOXRED2	Q8IWF2	684 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	WDR63	Q8IWG1	891 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	NAGS	Q8N159	534 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	RFLNB	Q8N5W9	214 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	TANK	Q92844	425 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	ZUFSP	Q96AP4	578 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	METTL2A	Q96IZ6	378 aa	Known RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	C3orf30	Q96M34	536 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	CSF3R	Q99062	836 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	KXD1	Q9BQD3	176 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	SPRY4	Q9C004	299 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	RETREG1	Q9H6L5	497 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	EBF2	Q9HAK2	575 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	PCDH9	Q9HC56	1237 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	TAS2R10	Q9NYW0	307 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	ERVK-11	Q9UQG0	969 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	NAALADL1	Q9UQQ1	740 aa		4.69	□□□□□ -1.66
CD44-223	ENST00000526553	AAR2	Q9Y312	384 aa	Known RBP	4.69	□□□□□ -1.66
CD44-223	ENST00000526553	GOLGA6L9	A6NEM1	432 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	KRT36	O76013	467 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	SEC31A	O94979	1220 aa	Known RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	ELF1	P32519	619 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	EIF2S3	P41091	472 aa	Known RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	BRWD1-AS2	P59051	145 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	CTF1	Q16619	201 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	USP41	Q3LFD5	358 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	ZNF672	Q499Z4	452 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	C6orf141	Q5SZD1	244 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	FAAH2	Q6GMR7	532 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	KRBA2	Q6ZNG9	492 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	CHERP	Q8IWX8	916 aa	Known RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	SPATA22	Q8NHS9	363 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	PKP4	Q99569	1192 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	SLC26A6	Q9BXS9	759 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	IFIH1	Q9BYX4	1025 aa	Known RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	KCNN2	Q9H2S1	579 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	PREB	Q9HCU5	417 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	GPR108	Q9NPR9	543 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	HINT3	Q9NQE9	182 aa	Known RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	ASAH2	Q9NR71	780 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	SLC6A13	Q9NSD5	602 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	MCM9	Q9NXL9	1143 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	ZNF112	Q9UJU3	913 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	FBXO2	Q9UK22	296 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-223	ENST00000526553	ICAM5	Q9UMF0	924 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	CAMK2A	Q9UQM7	478 aa		4.68	□□□□□ -1.66
CD44-223	ENST00000526553	IGHV4OR15-8	A0A075B7B6	117 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	IFITM10	A6NMD0	228 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	CLGN	O14967	610 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	MID1	O15344	667 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	MBD4	O95243	580 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	CENPB	P07199	599 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-223	ENST00000526553	G6PD	P11413	515 aa		4.67	□□□□□ -1.66
CD44-223	ENST00000526553	TNFAIP3	P21580	790 aa		4.67	□□□□□ -1.66

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