RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CABS1Q96KC9 395 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 TMEM237Q96Q45 408 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 GSDMAQ96QA5 445 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ITPAQ9BY32 194 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 DNAI2Q9GZS0 605 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 MUC13Q9H3R2 512 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 LIN28AQ9H9Z2 209 aaKnown RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 PDE7BQ9NP56 450 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 MORF4L1Q9UBU8 362 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 SUN2Q9UH99 717 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 CHORDC1Q9UHD1 332 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 INSL6Q9Y581 213 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ANGPTL3Q9Y5C1 460 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 PIAS3Q9Y6X2 628 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 AOX1Q06278 1338 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 JCADQ9P266 1359 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ANKARQ7Z5J8 1434 aa4.9□□□□□ -1.62
CD44-220ENST00000525688 RALGAPBQ86X10 1494 aa4.9□□□□□ -1.62
CD44-220ENST00000525688 A0A0B4J203 849 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 TCRBV7S3A2A0A539 114 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SH2B2O14492 632 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 CASQ2O14958 399 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 INPPL1O15357 1258 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 TGFB1I1O43294 461 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ZBTB43O43298 467 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 CEP104O60308 925 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 KLHL41O60662 606 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 RAMP2O60895 175 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 TBX10O75333 385 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SEC22BO75396 215 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 STAM2O75886 525 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 C1QL1O75973 258 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 KIAA0754O94854 1291 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 CCNDBP1O95273 360 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SERPINC1P01008 464 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SNRNP70P08621 437 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 C6P13671 934 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ST6GAL1P15907 406 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 KRT2P35908 639 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SKIV2L2P42285 1042 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 DPP6P42658 865 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 CLK3P49761 638 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 RAD23AP54725 363 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 EIF3BP55884 814 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 RPL7AP62424 266 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 TUBA4AP68366 448 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 HSF1Q00613 529 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 TFF2Q03403 129 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 DMTNQ08495 405 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 EPS8Q12929 822 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 STK4Q13043 487 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 MAMLD1Q13495 774 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 PRPF4BQ13523 1007 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 RABEP1Q15276 862 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 KYNUQ16719 465 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 DUSP28Q4G0W2 176 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 FBXO43Q4G163 708 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SLC9B1Q4ZJI4 515 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ARL13AQ5H913 290 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 LCE4AQ5TA78 99 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 FAM171A1Q5VUB5 890 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 FCRLBQ6BAA4 426 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 TMEM81Q6P7N7 255 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SHQ1Q6PI26 577 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 FIP1L1Q6UN15 594 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 RRM2BQ7LG56 351 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 SZRD1Q7Z422 152 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 CCDC105Q8IYK2 499 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 THNSL1Q8IYQ7 743 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ARL14EPQ8N8R7 260 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 PNLDC1Q8NA58 520 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 C11orf65Q8NCR3 313 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 Q8NFD4 153 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 KCNG4Q8TDN1 519 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 HDAC7Q8WUI4 952 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 LRRC59Q96AG4 307 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 FAM120BQ96EK7 910 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 TEFMQ96QE5 360 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 RPAP3Q9H6T3 665 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 PAPOLBQ9NRJ5 636 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 SEPT11Q9NVA2 429 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 GRHL1Q9NZI5 618 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 IL1RAPL1Q9NZN1 696 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ZNF624Q9P2J8 865 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 PEMTQ9UBM1 199 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 HSPB7Q9UBY9 170 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 FBXO4Q9UKT5 387 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 ICKQ9UPZ9 632 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 DHDHQ9UQ10 334 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 HS3ST3A1Q9Y663 406 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 NPHP3Q7Z494 1330 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 MED1Q15648 1581 aaPredicted RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 ROCK2O75116 1388 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 EIF3AQ14152 1382 aaKnown RBP4.9□□□□□ -1.63
CD44-220ENST00000525688 USP32Q8NFA0 1604 aa4.9□□□□□ -1.63
CD44-220ENST00000525688 PXDNQ92626 1479 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 TULP4Q9NRJ4 1543 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 SMIM22K7EJ46 135 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PRRG2O14669 202 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms