RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 BEST2Q8NFU1 509 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 OR14L1PQ8NHC6 308 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 IGFBPL1Q8WX77 278 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 PGAP3Q96FM1 320 aaPredicted RBP7.58□□□□□ -1.2
LSM1-202ENST00000520286 TTC14Q96N46 770 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 PAFAH2Q99487 392 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 FAM118BQ9BPY3 351 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 WDR83Q9BRX9 315 aaKnown RBP7.58□□□□□ -1.2
LSM1-202ENST00000520286 ALDH8A1Q9H2A2 487 aaPredicted RBP7.58□□□□□ -1.2
LSM1-202ENST00000520286 OSGEPL1Q9H4B0 414 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 THSD1Q9NS62 852 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 MRGBPQ9NV56 204 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 ARHGEF38Q9NXL2 777 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 R3HDM2Q9Y2K5 976 aaKnown RBP7.58□□□□□ -1.2
LSM1-202ENST00000520286 CMAHPQ9Y471 501 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 STRCQ7RTU9 1775 aa7.58□□□□□ -1.2
LSM1-202ENST00000520286 ARHGEF40Q8TER5 1519 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 ARHGEF12Q9NZN5 1544 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 TBX10O75333 385 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 MTA2O94776 668 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 AFPP02771 609 aaKnown RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 MMP2P08253 660 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 MYZAPP0CAP1 466 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 ENO3P13929 434 aaPredicted RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 EEF1DP29692 281 aaKnown RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 LIG4P49917 911 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 BAATQ14032 418 aaPredicted RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 C15orf59Q2T9L4 293 aaPredicted RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 SMTNL2Q2TAL5 461 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 C6orf10Q5SRN2 563 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 ZNF782Q6ZMW2 699 aaPredicted RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 ZNF793Q6ZN11 406 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 KDM1BQ8NB78 822 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 CEP76Q8TAP6 659 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 OTULINQ96BN8 352 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 SLC41A2Q96JW4 573 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 FAM110AQ9BQ89 295 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 KIFC3Q9BVG8 833 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 C1QTNF1Q9BXJ1 281 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 SLC28A3Q9HAS3 691 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 DDX4Q9NQI0 724 aaKnown RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 PPIEQ9UNP9 301 aaKnown RBP7.57□□□□□ -1.2
LSM1-202ENST00000520286 MYRFQ9Y2G1 1151 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 TRPV2Q9Y5S1 764 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 SCAPERQ9BY12 1400 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 TRAPPC8Q9Y2L5 1435 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 TTC37Q6PGP7 1564 aa7.57□□□□□ -1.2
LSM1-202ENST00000520286 ADAMDEC1O15204 470 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 RGS11O94810 467 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 ACTN1P12814 892 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 TACR2P21452 398 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 DCTDP32321 178 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 PNLIPRP2P54317 469 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 C9orf152Q5JTZ5 239 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 PIK3CD-AS1Q5SR53 167 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 LRIF1Q5T3J3 769 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 TMEM71Q6P5X7 295 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 ZNF66Q6ZN08 573 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 LINGO2Q7L985 606 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 KRTAP19-1Q8IUB9 90 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 WDR63Q8IWG1 891 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 HASPINQ8TF76 798 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 RRNAD1Q96FB5 475 aaKnown RBP7.56□□□□□ -1.2
LSM1-202ENST00000520286 HARBI1Q96MB7 349 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 MRPL1Q9BYD6 325 aaKnown RBP7.56□□□□□ -1.2
LSM1-202ENST00000520286 NPFFR1Q9GZQ6 430 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 ERVK-11Q9UQG0 969 aa7.56□□□□□ -1.2
LSM1-202ENST00000520286 NCOA1Q15788 1441 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 LRRC72A6NJI9 287 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 AKR1B15C9JRZ8 316 aaPredicted RBP7.55□□□□□ -1.2
LSM1-202ENST00000520286 TOM1O60784 492 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 FZD7O75084 574 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 CTSAP10619 480 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 GAD2Q05329 585 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 FAM27E3Q08E93 113 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 TCP11X2Q5H9J9 407 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 PAPD7Q5XG87 772 aaKnown RBP7.55□□□□□ -1.2
LSM1-202ENST00000520286 HEPHL1Q6MZM0 1159 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 HACE1Q8IYU2 909 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 RBFAQ8N0V3 343 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 Q8N1X5 172 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 AFAP1Q8N556 730 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 NSMCE1Q8WV22 266 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 IGSF8Q969P0 613 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 LRRC59Q96AG4 307 aaKnown RBP7.55□□□□□ -1.2
LSM1-202ENST00000520286 TMEM18Q96B42 140 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 TMCO6Q96DC7 493 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 VCPIP1Q96JH7 1222 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 PPP1R13BQ96KQ4 1090 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 SPATA17Q96L03 361 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 ZNF570Q96NI8 536 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 GAD1Q99259 594 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 CWC15Q9P013 229 aaKnown RBP7.55□□□□□ -1.2
LSM1-202ENST00000520286 EXO1Q9UQ84 846 aaKnown RBP7.55□□□□□ -1.2
LSM1-202ENST00000520286 NFE2L3Q9Y4A8 694 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 ZFYVE16Q7Z3T8 1539 aa7.55□□□□□ -1.2
LSM1-202ENST00000520286 ZNF644Q9H582 1327 aaPredicted RBP7.54□□□□□ -1.2
LSM1-202ENST00000520286 EEA1Q15075 1411 aa7.54□□□□□ -1.2
LSM1-202ENST00000520286 ZMYM4Q5VZL5 1548 aa7.54□□□□□ -1.2
LSM1-202ENST00000520286 LOC100509620A0A075B734 347 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms