RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 IFT80Q9P2H3 777 aaPredicted RBP9.67□□□□□ -0.86
VCAN-210ENST00000513960 GTF2IRD1Q9UHL9 959 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 USP3Q9Y6I4 520 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 FAM95CA0A1B0GW59 222 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 MBLAC1A4D2B0 266 aaPredicted RBP9.67□□□□□ -0.86
VCAN-210ENST00000513960 PSMD11O00231 422 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 NFATC3Q12968 1075 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 PPP1R8Q12972 351 aaKnown RBP9.67□□□□□ -0.86
VCAN-210ENST00000513960 NAB1Q13506 487 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 PCSK7Q16549 785 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 MOGQ16653 247 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 ARL13BQ3SXY8 428 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 FBXO48Q5FWF7 155 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 PAGE2BQ5JRK9 111 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 STXBP5Q5T5C0 1151 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 SYPL2Q5VXT5 272 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 HMBOX1Q6NT76 420 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 SCAIQ8N9R8 606 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 TUBGCP3Q96CW5 907 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 GLT1D1Q96MS3 346 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 NPY6RQ99463 290 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 ABCB10Q9NRK6 738 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 SLC27A5Q9Y2P5 690 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 ZSWIM8A7E2V4 1837 aa9.67□□□□□ -0.86
VCAN-210ENST00000513960 IQCA1LA6NCM1 817 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SNAP29O95721 258 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 PRKCGP05129 697 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CRYBB1P53674 252 aaPredicted RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 CTBSQ01459 385 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ITKQ08881 620 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 NFYCQ13952 458 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 STEAP4Q687X5 459 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 THOC7Q6I9Y2 204 aaKnown RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 IGFN1Q86VF2 1251 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 TICAM1Q8IUC6 712 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 TMEM126BQ8IUX1 230 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SLC15A3Q8IY34 581 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ARNTL2Q8WYA1 636 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SEPT8Q92599 483 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 HDAC10Q969S8 669 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SLC2A11Q9BYW1 496 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ANKRD60Q9BZ19 345 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ULBP1Q9BZM6 244 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SUCOQ9UBS9 1254 aaKnown RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 PLXNA1Q9UIW2 1896 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 M0QZ92 97 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 BEST1O76090 585 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ALDH1A2O94788 518 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 LDLRP01130 860 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 IL7RP16871 459 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 TRPC1P48995 793 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CPT1AP50416 773 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SQLEQ14534 574 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ANKRD26P1Q6NSI1 321 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CRTC3Q6UUV7 619 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CLEC20AQ6ZU45 233 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SLCO6A1Q86UG4 719 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 PSMA8Q8TAA3 256 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 MARCH7Q9H992 704 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 PIGVQ9NUD9 493 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 EXD2Q9NVH0 621 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 TMED5Q9Y3A6 229 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 C17orf102A2RUQ5 167 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 A6NL46 340 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 DFFAO00273 331 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SDHDO14521 159 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 PMPCBO75439 489 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 MYO1DO94832 1006 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ERCC2P18074 760 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 NFKB1P19838 968 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 TTKP33981 857 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ADRA1BP35368 520 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SEPHS1P49903 392 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CLCN2P51788 898 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ADAM17P78536 824 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 UBXN11Q5T124 520 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ZNF470Q6ECI4 717 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 CNSTQ6PJW8 725 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ERMP1Q7Z2K6 904 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 KCTD13Q8WZ19 329 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 ZFP42Q96MM3 310 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 EML4Q9HC35 981 aaKnown RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 TBC1D13Q9NVG8 400 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 WDR70Q9NW82 654 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 DDIT4Q9NX09 232 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 SMPD3Q9NY59 655 aaPredicted RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 TSR3Q9UJK0 312 aaKnown RBP9.66□□□□□ -0.86
VCAN-210ENST00000513960 ADAM28Q9UKQ2 775 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 BTRCQ9Y297 605 aa9.66□□□□□ -0.86
VCAN-210ENST00000513960 XYLBO75191 536 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 DEAF1O75398 565 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 CAPN15O75808 1086 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 RSL1D1O76021 490 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 RPS9P46781 194 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 YWHAHQ04917 246 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 PAFAH1B3Q15102 231 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 SCIMPQ6UWF3 145 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 CUZD1Q86UP6 607 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 Q8N9G6 341 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 OR6P1Q8NGX9 317 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms