RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KCTD3Q9Y597 815 aa16.5■□□□□ 0.23
VIM-208ENST00000497849 ZNF106Q9H2Y7 1883 aaKnown RBP16.5■□□□□ 0.23
VIM-208ENST00000497849 TNRC6AQ8NDV7 1962 aaKnown RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 C2CD3Q4AC94 2353 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 CFAP69A5D8W1 941 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 MKRN2OSH3BPM6 223 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 BUB1BO60566 1050 aaPredicted RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 SMC2O95347 1197 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 PDGFAP04085 211 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 F8A1P23610 371 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 CDH5P33151 784 aaPredicted RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 ADRA1BP35368 520 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 MC2RQ01718 297 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 STIM1Q13586 685 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 CYTH1Q15438 398 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 KLHL10Q6JEL2 608 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 HEATR4Q86WZ0 1026 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 ELOA2Q8IYF1 753 aaPredicted RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 PTCD2Q8WV60 388 aaKnown RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 C18orf8Q96DM3 657 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 DPYSL5Q9BPU6 564 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 NCAPGQ9BPX3 1015 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 GSDMCQ9BYG8 508 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 NUP62CLQ9H1M0 184 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 WDR26Q9H7D7 661 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 SUDS3Q9H7L9 328 aaPredicted RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 APMAPQ9HDC9 416 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 CUEDC1Q9NWM3 386 aaPredicted RBP16.49■□□□□ 0.23
VIM-208ENST00000497849 APEX2Q9UBZ4 518 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 MAN1B1Q9UKM7 699 aa16.49■□□□□ 0.23
VIM-208ENST00000497849 STK17BO94768 372 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 MBD3O95983 291 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 CEACAM5P06731 702 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 PNMA6AP0CW24 399 aaPredicted RBP16.48■□□□□ 0.23
VIM-208ENST00000497849 POU3F2P20265 443 aaPredicted RBP16.48■□□□□ 0.23
VIM-208ENST00000497849 DCTP40126 519 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 ATP11AP98196 1134 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 ILF3Q12906 894 aaKnown RBP eCLIP16.48■□□□□ 0.23
VIM-208ENST00000497849 SKOR2Q2VWA4 1001 aaPredicted RBP16.48■□□□□ 0.23
VIM-208ENST00000497849 PNCKQ6P2M8 343 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 BRAT1Q6PJG6 821 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 SLC30A9Q6PML9 568 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 LIPIQ6XZB0 460 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 KDELC2Q7Z4H8 507 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 ZNF354CQ86Y25 554 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 CAMK1DQ8IU85 385 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 TICAM1Q8IUC6 712 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 EFCAB3Q8N7B9 438 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 NELFBQ8WX92 580 aa16.48■□□□□ 0.23
VIM-208ENST00000497849 TRNAU1APQ9NX07 287 aaKnown RBP16.48■□□□□ 0.23
VIM-208ENST00000497849 HOOK1Q9UJC3 728 aaKnown RBP16.48■□□□□ 0.23
VIM-208ENST00000497849 TTLL8A6PVC2 850 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 PPP1R3GB7ZBB8 358 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 GOLGA8SH3BPF8 625 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 TEX33O43247 280 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 GNA14O95837 355 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 DLGAP3O95886 979 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 FURINP09958 794 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 STAT5AP42229 794 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 BIRC2Q13490 618 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 CEACAM20Q6UY09 585 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 ARHGAP22Q7Z5H3 698 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 DNAAF5Q86Y56 855 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 EMC1Q8N766 993 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 TMEM35BQ8NCS4 154 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 CPT1CQ8TCG5 803 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 TBC1D31Q96DN5 1066 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 ZNF641Q96N77 438 aaPredicted RBP16.47■□□□□ 0.23
VIM-208ENST00000497849 FBXO8Q9NRD0 319 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 TMEM63CQ9P1W3 806 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 TLK1Q9UKI8 766 aa16.47■□□□□ 0.23
VIM-208ENST00000497849 A8MU76 341 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 PDE2AO00408 941 aaPredicted RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 FOXN3O00409 490 aaPredicted RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 MYCLP1P12525 358 aaPredicted RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 GNPDA1P46926 289 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 COPB1P53618 953 aaKnown RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 GPLD1P80108 840 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 CTBSQ01459 385 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 GRM3Q14832 879 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 C15orf59Q2T9L4 293 aaPredicted RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 AFMIDQ63HM1 303 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 CAVIN1Q6NZI2 390 aaKnown RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 ARCQ7LC44 396 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 ZNF761Q86XN6 746 aaPredicted RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 ZPBPQ9BS86 351 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 TRIT1Q9H3H1 467 aaKnown RBP16.46■□□□□ 0.23
VIM-208ENST00000497849 KIAA1468Q9P260 1216 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 SUFUQ9UMX1 484 aa16.46■□□□□ 0.23
VIM-208ENST00000497849 KRT38O76015 456 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 CLDN1O95832 211 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 PLEKP08567 350 aaPredicted RBP16.45■□□□□ 0.22
VIM-208ENST00000497849 ELFN1P0C7U0 828 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 STX17P56962 302 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 RAPGEF1Q13905 1077 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 CDO1Q16878 200 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 SNAP47Q5SQN1 464 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 CFAP58Q5T655 872 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 PHLDB2Q86SQ0 1253 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 TMEM135Q86UB9 458 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms