RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 STT3AP46977 705 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 BCAP31P51572 246 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 IRF9Q00978 393 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NEPROQ6NW34 567 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 XKR5Q6UX68 686 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.77□□□□□ -0.688e-8■□□□□ 10.5
MSH5-SAPCD1-207ENST00000493662 MICU2Q8IYU8 434 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MYO1HQ8N1T3 1032 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF366Q8N895 744 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBXO22Q8NEZ5 403 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ING5Q8WYH8 240 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MRPS31Q92665 395 aaKnown RBP10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DACT3Q96B18 629 aaPredicted RBP10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DEPDC7Q96QD5 511 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HAPLN3Q96S86 360 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM62Q9BVG3 475 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 WDR55Q9H6Y2 383 aaPredicted RBP10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GDAP2Q9NXN4 497 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PCDHB9Q9Y5E1 797 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TLL2Q9Y6L7 1015 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC30A1Q9Y6M5 507 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MYOCOSA0A1B0GUC4 107 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 H3BNX3 289 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IDH3BO43837 385 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SNX2O60749 519 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GABBR2O75899 941 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SERPINF2P08697 491 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC2A3P11169 496 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RAD23AP54725 363 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CYP4F8P98187 520 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RELAQ04206 551 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CBX2Q14781 532 aaPredicted RBP10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MAPRE2Q15555 327 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RTP2Q5QGT7 225 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LDLRAP1Q5SW96 308 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRPC4APQ8TEL6 797 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRIM63Q969Q1 353 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SNX15Q9NRS6 342 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 POMPQ9Y244 141 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SQORQ9Y6N5 450 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ATP5BP06576 529 aaKnown RBP10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ACADVLP49748 655 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MYLK3Q32MK0 819 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SPDYAQ5MJ70 313 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GALNT18Q6P9A2 607 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PAQR9Q6ZVX9 377 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CAND1Q86VP6 1230 aaKnown RBP10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMEM173Q86WV6 379 aaPredicted RBP10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC44A1Q8WWI5 657 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NPY6RQ99463 290 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FRMD8P1Q9BZ68 369 aaPredicted RBP10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZYG11BQ9C0D3 744 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ALG9Q9H6U8 611 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NUMA1Q14980 2115 aa10.77□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MTSS1O43312 755 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TBL1XO60907 577 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SRP72O76094 671 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TGDSO95455 350 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGT1A6P19224 532 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGT1A1P22309 533 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGT1A4P22310 534 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EPHA3P29320 983 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 S100A5P33763 92 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGT1A3P35503 534 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGT1A5P35504 534 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HADHAP40939 763 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CCR10P46092 362 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CLK1P49759 484 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ARMC12Q5T9G4 340 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TAS1R1Q7RTX1 841 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RAB44Q7Z6P3 723 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AHI1Q8N157 1196 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DPF3Q92784 378 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PLEKHA8Q96JA3 519 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TBATAQ96M53 351 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 QKIQ96PU8 341 aaKnown RBP eCLIP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CXorf21Q9HAI6 301 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SCUBE2Q9NQ36 999 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TCF7L2Q9NQB0 619 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 VPS45Q9NRW7 570 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ARVCFO00192 962 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SH3BP5O60239 455 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CLASP2O75122 1294 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KATNA1O75449 491 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CABYRO75952 493 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GSNP06396 782 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C2P06681 752 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HSPA1AP0DMV8 641 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HSPA1BP0DMV9 641 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 COX4I1P13073 169 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 INHBCP55103 352 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SULT2A1Q06520 285 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCBP1Q15365 356 aaKnown RBP eCLIP10.76□□□□□ -0.698e-7■■■■□ 25
MSH5-SAPCD1-207ENST00000493662 HECTD3Q5T447 861 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FOXB2Q5VYV0 432 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CENPSQ8N2Z9 138 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SMIM14Q96QK8 99 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OSBPL11Q9BXB4 747 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OSBPL10Q9BXB5 764 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CEP44Q9C0F1 390 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms