RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ARID3BQ8IVW6 561 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 LCORLQ8N3X6 602 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ZBTB2Q8N680 514 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 SLC4A11Q8NBS3 891 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 FIBINQ8TAL6 211 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 EXTL1Q92935 676 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 P2RY11Q96G91 374 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF419Q96HQ0 510 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 AK8Q96MA6 479 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HARBI1Q96MB7 349 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF830Q96NB3 372 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF558Q96NG5 402 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 NUDCD1Q96RS6 583 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 TM2D2Q9BX73 214 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 GPR88Q9GZN0 384 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 MMP27Q9H306 513 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ACTR5Q9H9F9 607 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 AKAP7Q9P0M2 348 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 FNDC1Q4ZHG4 1894 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 PSMD14O00487 310 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ATP2A1O14983 1001 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 KIF1CO43896 1103 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RSL1D1O76021 490 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 C8AP07357 584 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TFPIP10646 304 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 PDGFRAP16234 1089 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 GJA1P17302 382 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 SP100P23497 879 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TACR3P29371 465 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CENPAP49450 140 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CDH13P55290 713 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 NAE1Q13564 534 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RCN2Q14257 317 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ARHGEF6Q15052 776 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 USP41Q3LFD5 358 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 KIAA1755Q5JYT7 1200 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RARS2Q5T160 578 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TSPAN14Q8NG11 270 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 PROKR1Q8TCW9 393 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ACTRT2Q8TDY3 377 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 IGSF8Q969P0 613 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RNF183Q96D59 192 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RRNAD1Q96FB5 475 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TEPSINQ96N21 525 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 INTS14Q96SY0 518 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RTN4RQ9BZR6 473 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 NRIP3Q9NQ35 241 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ST6GALNAC2Q9UJ37 374 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 HACL1Q9UJ83 578 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 KCNK7Q9Y2U2 307 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 LIPGQ9Y5X9 500 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 A3GALT2U3KPV4 340 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 A0A096LPK6 155 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 MAGEB17A8MXT2 336 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 BTBD19C9JJ37 291 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF263O14978 683 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RNMTO43148 476 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CELF2O95319 508 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 AGAP20933 346 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RFC1P35251 1148 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CXCR3P49682 368 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 SLC12A2P55011 1212 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 MRPS35P82673 323 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TUBB2AQ13885 445 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CAPSQ13938 189 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF124Q15973 351 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 LEXMQ3ZCV2 418 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 FAM153CQ494X1 144 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CBWD6Q4V339 395 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 USP39Q53GS9 565 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CBWD3Q5JTY5 395 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 KRT39Q6A163 491 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TMEM211Q6ICI0 200 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 RAB12Q6IQ22 244 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 AAGABQ6PD74 315 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 LRIG3Q6UXM1 1119 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CATSPER4Q7RTX7 472 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 IGFN1Q86VF2 1251 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 SYCP3Q8IZU3 236 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 PARP16Q8N5Y8 322 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TRIML1Q8N9V2 468 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 HAS1Q92839 578 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 FBXL8Q96CD0 374 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 PLEKHG4BQ96PX9 1271 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 TUBB2BQ9BVA1 445 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 SPATC1LQ9H0A9 340 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 PCED1AQ9H1Q7 454 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 CNOT10Q9H9A5 744 aaKnown RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 NDRG3Q9UGV2 375 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ARMCX3Q9UH62 379 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-212ENST00000493341 ERVK-11Q9UQG0 969 aa4.73□□□□□ -1.65
VPS13A-212ENST00000493341 SLC22A23A1A5C7 686 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 CGB1A6NKQ9 187 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 B3GALNT1O75752 331 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 CAMTA2O94983 1202 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 HMOX1P09601 288 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 ACHEP22303 614 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 HSPA4P34932 840 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PTGS2P35354 604 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PRCPP42785 496 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms