RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TMPRSS7Q7RTY8 843 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 RD3Q7Z3Z2 195 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 TECPR1Q7Z6L1 1165 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 HID1Q8IV36 788 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 CCDC50Q8IVM0 306 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 RCOR2Q8IZ40 523 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 EXD1Q8NHP7 514 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 SPATA22Q8NHS9 363 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PTCD2Q8WV60 388 aaKnown RBP18.14■□□□□ 0.49
COL9A3-214ENST00000490398 OR1E3Q8WZA6 343 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 ALG3Q92685 438 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 NUS1Q96E22 293 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 DTD2Q96FN9 168 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PDXPQ96GD0 296 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 APOLD1Q96LR9 279 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PCDH9Q9HC56 1237 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 FGF22Q9HCT0 170 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 MRPL40Q9NQ50 206 aaKnown RBP18.14■□□□□ 0.49
COL9A3-214ENST00000490398 NLGN3Q9NZ94 848 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 CD84Q9UIB8 345 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PCDHA3Q9Y5H8 950 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 TDRD6O60522 2096 aaKnown RBP18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PPP1R12AO14974 1030 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 CASC3O15234 703 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 RFPL3O75679 317 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 IPO7O95373 1038 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 CYP2A6P11509 494 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 TSHRP16473 764 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 PTPN3P26045 913 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 CD68P34810 354 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 TRIM23P36406 574 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 PPARDQ03181 441 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 TFDP2Q14188 446 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 GALNT3Q14435 633 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 SMAD1Q15797 465 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 CDKN3Q16667 212 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 QPCTQ16769 361 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 TFDP3Q5H9I0 405 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 ESRP1Q6NXG1 681 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 USP45Q70EL2 814 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 KDELC2Q7Z4H8 507 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 KIAA1328Q86T90 577 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 ZC3H18Q86VM9 953 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 IMP4Q96G21 291 aaKnown RBP18.13■□□□□ 0.49
COL9A3-214ENST00000490398 TRIB3Q96RU7 358 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 AGAP2Q99490 1192 aa18.13■□□□□ 0.49
COL9A3-214ENST00000490398 MACROD2A1Z1Q3 448 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 F5H423 210 aaPredicted RBP18.12■□□□□ 0.49
COL9A3-214ENST00000490398 H3BM21 787 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 TOR1BO14657 336 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 CLDN7O95471 211 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 SOD1P00441 154 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 FUCA1P04066 466 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 TGM2P21980 687 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 CES1P23141 567 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 ACP1P24666 158 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 NR2C2P49116 596 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 HK3P52790 923 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 EPHB1P54762 984 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 KIAA1024LP59773 190 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 ARHGEF7Q14155 803 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 BBS12Q6ZW61 710 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 NT5DC3Q86UY8 548 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 KIAA1524Q8TCG1 905 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 SCAMP4Q969E2 229 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 TADA1Q96BN2 335 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 WDR92Q96MX6 357 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 FAM118BQ9BPY3 351 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 ABCG8Q9H221 673 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 GLOD4Q9HC38 313 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 SPASTQ9UBP0 616 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 PACSIN2Q9UNF0 486 aaPredicted RBP18.12■□□□□ 0.49
COL9A3-214ENST00000490398 PCDHGA1Q9Y5H4 931 aa18.12■□□□□ 0.49
COL9A3-214ENST00000490398 PLXNB3Q9ULL4 1909 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 CAPN8A6NHC0 703 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 YY2O15391 372 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 MT-CYBP00156 380 aaPredicted RBP18.11■□□□□ 0.49
COL9A3-214ENST00000490398 PROS1P07225 676 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 PYGMP11217 842 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 CTNNA2P26232 953 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 STC1P52823 247 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 SRP54P61011 504 aaKnown RBP18.11■□□□□ 0.49
COL9A3-214ENST00000490398 DAB2P98082 770 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 PPP2R5EQ16537 467 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 TEX44Q53QW1 395 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 HEATR4Q86WZ0 1026 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 SFTPA2Q8IWL1 248 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 BTN2A2Q8WVV5 523 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 P3H4Q92791 437 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 RBM41Q96IZ5 413 aaKnown RBP18.11■□□□□ 0.49
COL9A3-214ENST00000490398 TEKT5Q96M29 485 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 WDR24Q96S15 920 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 ANP32EQ9BTT0 268 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 SLC13A1Q9BZW2 595 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 SLC25A51Q9H1U9 297 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 UBP1Q9NZI7 540 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 KLQ9UEF7 1012 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 CSNK1G3Q9Y6M4 447 aa18.11■□□□□ 0.49
COL9A3-214ENST00000490398 KMT2BQ9UMN6 2715 aaPredicted RBP18.11■□□□□ 0.49
COL9A3-214ENST00000490398 PTPRBP23467 1997 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms