RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 LVRNQ6Q4G3 990 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 Q6ZVL8 140 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TECPR1Q7Z6L1 1165 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 LRRC49Q8IUZ0 686 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 KCTD6Q8NC69 237 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 SLC35G2Q8TBE7 412 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 NUS1Q96E22 293 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 PRR11Q96HE9 360 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 CCDC3Q9BQI4 270 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TMEM168Q9H0V1 697 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TSPY26PQ9H489 355 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 DTLQ9NZJ0 730 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ENTPD2Q9Y5L3 495 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 RAI2Q9Y5P3 530 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ST14Q9Y5Y6 855 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 PTPRQQ9UMZ3 2332 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 NTN3O00634 580 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 MTA2O94776 668 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 HLA-DQB2P05538 268 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TRIM14Q14142 442 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 MESDQ14696 234 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TBC1D25Q3MII6 688 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 PLD5Q8N7P1 536 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ARL10Q8N8L6 244 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 GPR156Q8NFN8 814 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ATXN7L3BQ96GX2 97 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 HIC2Q96JB3 615 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 BBC3Q96PG8 261 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TEX101Q9BY14 249 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ABCG4Q9H172 646 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 NHEJ1Q9H9Q4 299 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ASCL3Q9NQ33 180 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 GULP1Q9UBP9 304 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ARHGEF17Q96PE2 2063 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 A0A1W2PQ67 120 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 TNFRSF10CO14798 259 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CBFA2T2O43439 604 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 NOBOXO60393 691 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 DXOO77932 396 aaKnown RBP14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CEACAM5P06731 702 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 TPM3P06753 285 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 MMP2P08253 660 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CTSEP14091 401 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 KDELR1P24390 212 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CCNCP24863 283 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 GABREP78334 506 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 GSE1Q14687 1217 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 ARMC12Q5T9G4 340 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 DENND2CQ68D51 928 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 OGFOD3Q6PK18 319 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 HEATR4Q86WZ0 1026 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 NRROSQ86YC3 692 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CNTD1Q8N815 330 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 CCDC74AQ96AQ1 378 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 RNF157Q96PX1 679 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 FRMD8Q9BZ67 464 aaPredicted RBP14.1□□□□□ -0.15
UPF3A-204ENST00000475218 WDR26Q9H7D7 661 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 EVA1BQ9NVM1 165 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 GPR34Q9UPC5 381 aa14.1□□□□□ -0.15
UPF3A-204ENST00000475218 A0A1W2PQM1 296 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 PRSS38A1L453 326 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 CACNB4O00305 520 aaPredicted RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 AKR1B10O60218 316 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 TNFP01375 233 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 KRT7P08729 469 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 MYCLP1P12525 358 aaPredicted RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 CCNB1P14635 433 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 LSSP48449 732 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 RPIAP49247 311 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 PTSQ03393 145 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 IFI16Q16666 785 aaKnown RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 SOWAHCQ53LP3 525 aaPredicted RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 B3GNT8Q7Z7M8 397 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 BBS5Q8N3I7 341 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 SDR16C5Q8N3Y7 309 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 PAF1Q8N7H5 531 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 FGF11Q92914 225 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 NAT6Q93015 286 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 HDAC11Q96DB2 347 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 LGMNQ99538 433 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 TDRD1Q9BXT4 1180 aaKnown RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 POLR1EQ9GZS1 481 aaKnown RBP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 RBM22Q9NW64 420 aaKnown RBP eCLIP14.09□□□□□ -0.15
UPF3A-204ENST00000475218 SATB2Q9UPW6 733 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 A0A0J9YYE9 177 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 PSMD11O00231 422 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 TRBC1P01850 177 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 CDK3Q00526 305 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 DPTQ07507 201 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 ZBTB17Q13105 803 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 LRRC66Q68CR7 880 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 SLC9A4Q6AI14 798 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 GKN2Q86XP6 184 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 NSMCE1Q8WV22 266 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 GLMNQ92990 594 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 AGAP2Q99490 1192 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 DEF6Q9H4E7 631 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 POLR1BQ9H9Y6 1135 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 CYP4F12Q9HCS2 524 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms