RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 TCF7L2Q9NQB0 619 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 POLR3BQ9NW08 1133 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 NOP53Q9NZM5 478 aaKnown RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 VPS51Q9UID3 782 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 ZNF510Q9Y2H8 683 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 MED16Q9Y2X0 877 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 RAI2Q9Y5P3 530 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CENPFP49454 3210 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 TYW5A2RUC4 315 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 ANKRD66B4E2M5 251 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 H0Y626 953 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 TGM5O43548 720 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 FGF18O76093 207 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CNPP09543 421 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 PIRTP0C851 137 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 HDCP19113 662 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 LPOP22079 712 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 KCNA5P22460 613 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 GABRR2P28476 465 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 PGM1P36871 562 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CSKP41240 450 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CLCN4P51793 760 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 PLK1P53350 603 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 COPAP53621 1224 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 INHBCP55103 352 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 ADARP55265 1226 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 AP1S1P61966 158 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 SULT2A1Q06520 285 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 HERC3Q15034 1050 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 LSM12Q3MHD2 195 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 ACSBG2Q5FVE4 666 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CFAP157Q5JU67 520 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 GPR158Q5T848 1215 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 FAM117BQ6P1L5 589 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 FBXO46Q6PJ61 603 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 FRMD7Q6ZUT3 714 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 GAREM2Q75VX8 874 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 NET1Q7Z628 596 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 SDCCAG8Q86SQ7 713 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 PIM3Q86V86 326 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 SPATA6LQ8N4H0 392 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CARNMT1Q8N4J0 409 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 TMEM199Q8N511 208 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 OR4K2Q8NGD2 314 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 WFDC5Q8TCV5 224 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 SH3RF2Q8TEC5 729 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 MRPS31Q92665 395 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 CLP1Q92989 425 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 USP13Q92995 863 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 PTERQ96BW5 349 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 CMTM5Q96DZ9 223 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 TMA16Q96EY4 203 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 FAR2Q96K12 515 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 EXOC2Q96KP1 924 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 LMLNQ96KR4 655 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 ANKRD27Q96NW4 1050 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 ATOH8Q96SQ7 321 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 FEM1AQ9BSK4 669 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 BEGAINQ9BUH8 593 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 ADGRE3Q9BY15 652 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 TFB2MQ9H5Q4 396 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 DCLRE1BQ9H816 532 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 IL23AQ9NPF7 189 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 WBP1LQ9NX94 342 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 SMPD4Q9NXE4 827 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 NKX1-2Q9UD57 310 aaPredicted RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 LSM7Q9UK45 103 aaKnown RBP9.81□□□□□ -0.84
USP39-214ENST00000474572 L3MBTL1Q9Y468 752 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 IRAK3Q9Y616 596 aa9.81□□□□□ -0.84
USP39-214ENST00000474572 A0A088AWK7 358 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 LCHNA4D1U4 455 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 NEMP2A6NFY4 417 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 C2orf81A6NN90 581 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 SDHDO14521 159 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 BUD23O43709 281 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 CCNT2O60583 730 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 COX4I1P13073 169 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 EZRP15311 586 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 IMPDH1P20839 514 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 PIK3R1P27986 724 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 EPHA5P54756 1037 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 RPL26P61254 145 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 XIAPP98170 497 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 CYP4F8P98187 520 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 KDSRQ06136 332 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 PEX6Q13608 980 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 E2F5Q15329 346 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 TRMT5Q32P41 509 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 MPPE1Q53F39 396 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 ZNF678Q5SXM1 525 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 TXNDC8Q6A555 127 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 PGM2L1Q6PCE3 622 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 CCDC149Q6ZUS6 474 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 ACAD11Q709F0 780 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 CHSY3Q70JA7 882 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 RTL10Q7L3V2 364 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 METTL3Q86U44 580 aaKnown RBP9.8□□□□□ -0.84
USP39-214ENST00000474572 SCUBE1Q8IWY4 988 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 ULK2Q8IYT8 1036 aa9.8□□□□□ -0.84
USP39-214ENST00000474572 PELI3Q8N2H9 469 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms