RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 CLN3Q13286 438 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 EIF3IQ13347 325 aaKnown RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 SPIDRQ14159 915 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 KRT81Q14533 505 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 POLD3Q15054 466 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 PPP2R5EQ16537 467 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 TFDP3Q5H9I0 405 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 KIAA1614Q5VZ46 1190 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 ESRP1Q6NXG1 681 aaKnown RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 CCDC81Q6ZN84 652 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 CCDC50Q8IVM0 306 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 RASGEF1CQ8N431 466 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 FSTL5Q8N475 847 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 KCTD6Q8NC69 237 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 OR6K2Q8NGY2 324 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 FAM71BQ8TC56 605 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 HSPH1Q92598 858 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 NAP1L3Q99457 506 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 ZNF670Q9BS34 389 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 SLC13A1Q9BZW2 595 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 CLPBQ9H078 707 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 MAGEH1Q9H213 219 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 DHX35Q9H5Z1 703 aaKnown RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 NDFIP2Q9NV92 336 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 TMEM248Q9NWD8 314 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 RCOR3Q9P2K3 495 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 CDC23Q9UJX2 597 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 ACSL6Q9UKU0 697 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 ATXN7L1Q9ULK2 861 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 TTC7AQ9ULT0 858 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-206ENST00000471037 PADI4Q9UM07 663 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 NEU3Q9UQ49 428 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 EFR3BQ9Y2G0 817 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 MRFAP1Q9Y605 127 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 MYO18BQ8IUG5 2567 aa9.14□□□□□ -0.95
SF3A1-206ENST00000471037 CHD5Q8TDI0 1954 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 ZSCAN5CA6NGD5 496 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 D6RAR5 112 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 H3BRJ5 948 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PGRMC1O00264 195 aaKnown RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 KRIT1O00522 736 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PLD2O14939 933 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CASC3O15234 703 aaKnown RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 YY2O15391 372 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CEP104O60308 925 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 TM7SF2O76062 418 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 POP4O95707 220 aaKnown RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PYGMP11217 842 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 TSHRP16473 764 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 KDELR1P24390 212 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 ARL4AP40617 200 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CDKN2BP42772 138 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PAFAH1B1P43034 410 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 BLKP51451 505 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PPARDQ03181 441 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CKAP4Q07065 602 aaKnown RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 C1orf61Q13536 156 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 TAZQ16635 292 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 WHAMMP3Q1A5X7 153 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 MYLK3Q32MK0 819 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 ATP13A4Q4VNC1 1196 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CCDC181Q5TID7 509 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 LVRNQ6Q4G3 990 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 GDPD4Q6W3E5 623 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 SPOCD1Q6ZMY3 1216 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 SDR16C5Q8N3Y7 309 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 RYBPQ8N488 228 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 ARL10Q8N8L6 244 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 TP53I13Q8NBR0 393 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 ACTRT1Q8TDG2 376 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 COG1Q8WTW3 980 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 MAIP1Q8WWC4 291 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CASKIN2Q8WXE0 1202 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 RAPGEF5Q92565 580 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 RNF25Q96BH1 459 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 GDAP1L1Q96MZ0 367 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 KLHL32Q96NJ5 620 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CCNL2Q96S94 520 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 EPAS1Q99814 870 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 C1QTNF7Q9BXJ2 289 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 OSBPL8Q9BZF1 889 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 CLMPQ9H6B4 373 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 L2HGDHQ9H9P8 463 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 PCDH18Q9HCL0 1135 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 RRAGDQ9NQL2 400 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 MBNL1Q9NR56 388 aaKnown RBP9.13□□□□□ -0.95
SF3A1-206ENST00000471037 DKK3Q9UBP4 350 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 OR12D3Q9UGF7 316 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 MFHAS1Q9Y4C4 1052 aa9.13□□□□□ -0.95
SF3A1-206ENST00000471037 hCG_1818297A0A087WSY0 165 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 C3orf70A6NLC5 250 aaPredicted RBP9.12□□□□□ -0.95
SF3A1-206ENST00000471037 FAM72CH0Y354 149 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 TMX2-CTNND1H3BSU7 103 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 EEF2KO00418 725 aaKnown RBP9.12□□□□□ -0.95
SF3A1-206ENST00000471037 ZNF185O15231 689 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 SLC28A2O43868 658 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 MMP20O60882 483 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 RAMP2O60895 175 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 LRIG2O94898 1065 aa9.12□□□□□ -0.95
SF3A1-206ENST00000471037 TJP3O95049 919 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms