RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CDRT15L2A8MXV6 281 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 MYO1FO00160 1098 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 PDE2AO00408 941 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 MYCLP1P12525 358 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 TMPRSS3P57727 454 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 MAXP61244 160 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 CCL7P80098 99 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 SKOR1P84550 965 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 TRAF2Q12933 501 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 KRT81Q14533 505 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 NFKBIBQ15653 356 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 TSR1Q2NL82 804 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 ALKBH5Q6P6C2 394 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 CBARPQ8N350 705 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 ARL14Q8N4G2 192 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 LSM14AQ8ND56 463 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 FAM46DQ8NEK8 389 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 FAM71BQ8TC56 605 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 LIN37Q96GY3 246 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 GFM1Q96RP9 751 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 TMEM168Q9H0V1 697 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 CYP4F12Q9HCS2 524 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 PHPT1Q9NRX4 125 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 LUC7L2Q9Y383 392 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 TENM4Q6N022 2769 aa16.59■□□□□ 0.25
CCDC28B-204ENST00000469003 A0A1W2PQM1 296 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 PRSS38A1L453 326 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 PMS2P1A4D2B8 440 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 D6RAR5 112 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 TMX2-CTNND1H3BSU7 103 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 PSMD11O00231 422 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 NOBOXO60393 691 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 PGLSO95336 258 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 RPLP0P05388 317 aaKnown RBP16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 IL4RP24394 825 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 HADHQ16836 314 aaKnown RBP16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 CCDC122Q5T0U0 273 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 ARMC12Q5T9G4 340 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 FOXR1Q6PIV2 292 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 CLEC14AQ86T13 490 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 TEX26Q8N6G2 289 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 CCDC97Q96F63 343 aaPredicted RBP16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 DTD2Q96FN9 168 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 SCRN2Q96FV2 425 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 TEX101Q9BY14 249 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 LRRN3Q9H3W5 708 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 MOSPD1Q9UJG1 213 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 APPL1Q9UKG1 709 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 PPIL1Q9Y3C6 166 aa16.58■□□□□ 0.24
CCDC28B-204ENST00000469003 NPIPB15A6NHN6 443 aaPredicted RBP16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 GOLGA6L19H0YKK7 550 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 KLK10O43240 276 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 C1QL1O75973 258 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 TNFSF15O95150 251 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 GYPCP04921 128 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 CD48P09326 243 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 PNLIPP16233 465 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 GLB1P16278 677 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 LHCGRP22888 699 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 SSR1P43307 286 aaKnown RBP16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 ARSEP51690 589 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 MMRN1Q13201 1228 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 EIF3IQ13347 325 aaKnown RBP16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 C14orf28Q4W4Y0 310 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 CERCAMQ5T4B2 595 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 DENND2CQ68D51 928 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 HSD11B1LQ7Z5J1 315 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 B3GNT8Q7Z7M8 397 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF605Q86T29 641 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 HEATR4Q86WZ0 1026 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 CCNJLQ8IV13 435 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 CCL4L1Q8NHW4 92 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF564Q8TBZ8 553 aaPredicted RBP16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 MCCC1Q96RQ3 725 aaPredicted RBP16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 STRADBQ9C0K7 418 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 EPB41L5Q9HCM4 733 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 NT5MQ9NPB1 228 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 NENFQ9UMX5 172 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 SSUH2Q9Y2M2 353 aa16.57■□□□□ 0.24
CCDC28B-204ENST00000469003 B4DGG1 531 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 PLD2O14939 933 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 MFSD11O43934 449 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 ITGA2BP08514 1039 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 PLA2G2AP14555 144 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 TEAD1P28347 426 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 CCKBRP32239 447 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 ETV3P41162 512 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 GARSP41250 739 aaKnown RBP16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 INHBCP55103 352 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 CDK3Q00526 305 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 GALNT2Q10471 571 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 ARHGEF7Q14155 803 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 DPYSL3Q14195 570 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 HLTFQ14527 1009 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 PAFAH1B3Q15102 231 aaKnown RBP16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 SPECC1LQ69YQ0 1117 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 USP45Q70EL2 814 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 TSPAN33Q86UF1 283 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 KIAA1524Q8TCG1 905 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 GPBAR1Q8TDU6 330 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms