RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TNFRSF10CO14798 259 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 MAFKO60675 156 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 TPM1P09493 284 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 CTPS1P17812 591 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 GNPDA1P46926 289 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 CCL7P80098 99 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 C19orf57Q0VDD7 668 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 EIF3IQ13347 325 aaKnown RBP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 PEX6Q13608 980 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 CNGA3Q16281 694 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 MAP9Q49MG5 647 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 ARHGAP40Q5TG30 622 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 HEATR4Q86WZ0 1026 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 LRRC49Q8IUZ0 686 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 FBXO39Q8N4B4 442 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 NIPA2Q8N8Q9 360 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 ZNF830Q96NB3 372 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 MGME1Q9BQP7 344 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 GSDMCQ9BYG8 508 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 FOXP3Q9BZS1 431 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 TMEM168Q9H0V1 697 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 LRRN3Q9H3W5 708 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 ZNHIT6Q9NWK9 470 aaKnown RBP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 AKAP7Q9P0M2 348 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 RCOR3Q9P2K3 495 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 CAPN11Q9UMQ6 739 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.54■□□□□ 0.4
COL7A1-206ENST00000466591 ANKRD36A6QL64 1941 aa17.54■□□□□ 0.4
COL7A1-206ENST00000466591 A0A087X0T9 212 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 RHPN2P1A8MT19 583 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 D6RAR5 112 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 AGRPO00253 132 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 HEXIM1O94992 359 aaKnown RBP17.53■□□□□ 0.4
COL7A1-206ENST00000466591 CYP1A2P05177 515 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 HOXC4P09017 264 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-206ENST00000466591 FAM228BP0C875 321 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 GLB1P16278 677 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 ETV3P41162 512 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 GPR1P46091 355 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 ZSCAN23Q3MJ62 389 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 C14orf28Q4W4Y0 310 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 HGSNATQ68CP4 663 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 DOK6Q6PKX4 331 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 RAB11FIP2Q7L804 512 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 HIC2Q96JB3 615 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 SLC46A1Q96NT5 459 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 BBC3Q96PG8 261 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-206ENST00000466591 SEMA3CQ99985 751 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 CPNE5Q9HCH3 593 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 LRIT1Q9P2V4 623 aa17.53■□□□□ 0.4
COL7A1-206ENST00000466591 PLD2O14939 933 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 ATXN7O15265 892 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-206ENST00000466591 HTRA2O43464 458 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-206ENST00000466591 PGLSO95336 258 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 MLLT3P42568 568 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-206ENST00000466591 SLC25A11Q02978 314 aaKnown RBP17.52■□□□□ 0.4
COL7A1-206ENST00000466591 TRAF2Q12933 501 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 MMRN1Q13201 1228 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 PHF19Q5T6S3 580 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 SPECC1LQ69YQ0 1117 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 TXNRD3NBQ6F5E7 133 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 PGBD5Q8N414 524 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 CCNYQ8ND76 341 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-206ENST00000466591 DTD2Q96FN9 168 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 FUCA2Q9BTY2 467 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 LGR4Q9BXB1 951 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 ASCL3Q9NQ33 180 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 LCMT1Q9UIC8 334 aa17.52■□□□□ 0.4
COL7A1-206ENST00000466591 LAMA5O15230 3695 aa17.52■□□□□ 0.39
COL7A1-206ENST00000466591 LRRK1Q38SD2 2015 aa17.52■□□□□ 0.39
COL7A1-206ENST00000466591 TK2O00142 265 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 PSMD11O00231 422 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 MFSD11O43934 449 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 ITGA2BP08514 1039 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 KRT7P08729 469 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 H2AFZP0C0S5 128 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 CASP14P31944 242 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 IFI16Q16666 785 aaKnown RBP17.51■□□□□ 0.39
COL7A1-206ENST00000466591 CERCAMQ5T4B2 595 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 SLC30A9Q6PML9 568 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 IGF2-ASQ6U949 168 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 NYAP1Q6ZVC0 841 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 H2AFVQ71UI9 128 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 HSD11B1LQ7Z5J1 315 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 ZDHHC1Q8WTX9 485 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 SCRN2Q96FV2 425 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 LIN37Q96GY3 246 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-206ENST00000466591 COQ10AQ96MF6 247 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 CDH19Q9H159 772 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 PISDQ9UG56 409 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 CD84Q9UIB8 345 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 DNPEPQ9ULA0 475 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 CELSR3Q9NYQ7 3312 aa17.51■□□□□ 0.39
COL7A1-206ENST00000466591 NPIPB15A6NHN6 443 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 NTN3O00634 580 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CBFA2T2O43439 604 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 AKR1B10O60218 316 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 MAP3K6O95382 1288 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 ASMTLO95671 621 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms