RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SLC24A3Q9HC58 644 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 FBRSL1Q9HCM7 1045 aaKnown RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ADA2Q9NZK5 511 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ASB3Q9Y575 518 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHB7Q9Y5E2 793 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHGA7Q9Y5G6 932 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ZFP37Q9Y6Q3 630 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 A0A1W2PQ45 241 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 A0A1W2PQY0 241 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 H3BMM5 538 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 UBXN8O00124 270 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PSMD12O00232 456 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 FBP2O00757 339 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ACOT8O14734 319 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ADAM12O43184 909 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 TBC1D4O60343 1298 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 RPP40O75818 363 aaKnown RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SERPINF2P08697 491 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 CCNHP51946 323 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 INHBCP55103 352 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 RPS24P62847 133 aaKnown RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 HERVK_113P63132 956 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SH3BP2P78314 561 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SP3Q02447 781 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 GALNT1Q10472 559 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PDAP1Q13442 181 aaKnown RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 MED21Q13503 144 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PTK2BQ14289 1009 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 RFTN1Q14699 578 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 GPNMBQ14956 572 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 OR4D1Q15615 310 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 MRNIPQ6NTE8 343 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 LRRC8DQ7L1W4 858 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 AFAP1L2Q8N4X5 818 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PTGR2Q8N8N7 351 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 OR9I1Q8NGQ6 314 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 OR4L1Q8NH43 312 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 L3HYPDHQ96EM0 354 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 CDKN2AIPNLQ96HQ2 116 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 KLHL32Q96NJ5 620 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 GCNAQ96QF7 691 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ERVK-6Q9BXR3 956 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 COPS7BQ9H9Q2 264 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 PIDD1Q9HB75 910 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 STARD7Q9NQZ5 370 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 CATSPERZQ9NTU4 200 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 C6orf203Q9P0P8 240 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ANKRD12Q6UB98 2062 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SLC38A8A6NNN8 435 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 E7ENX8 843 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 TXNDC9O14530 226 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 BCAS2O75934 225 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 GJB5O95377 273 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 EPOP01588 193 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF37AP17032 561 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PMLP29590 882 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SLC26A3P40879 764 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SCNN1BP51168 640 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PSME3P61289 254 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 GNA12Q03113 381 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 LRP8Q14114 963 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SQLEQ14534 574 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 UGT3A2Q3SY77 523 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 MMEL1Q495T6 779 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 FBXL19Q6PCT2 694 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PAOXQ6QHF9 649 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 LARP4Q71RC2 724 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 LILRA2Q8N149 483 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 GPR150Q8NGU9 434 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 NSUN5Q96P11 429 aaKnown RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 TRIB3Q96RU7 358 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 CACNA2D2Q9NY47 1150 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 DTNAQ9Y4J8 743 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SPO11Q9Y5K1 396 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PTGDR2Q9Y5Y4 395 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 UBA6A0AVT1 1052 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 MOXD2PA6NHM9 499 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 ENO4A6NNW6 628 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PEX1O43933 1283 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 ACSL4O60488 711 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 SMIM24O75264 130 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 NDST3O95803 873 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 MTHFD2P13995 350 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 RPL17P18621 184 aaKnown RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 STC1P52823 247 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 FOXA1P55317 472 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 XIAPP98170 497 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 FOLH1Q04609 750 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PFKFB4Q16877 469 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 TCTN1Q2MV58 587 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 FBXO48Q5FWF7 155 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 REP15Q6BDI9 236 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 LAYNQ6UX15 382 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 DENND1CQ8IV53 801 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 ICA1LQ8NDH6 482 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 BCL7CQ8WUZ0 217 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-217ENST00000466159 RMDN1Q96DB5 314 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 DCUN1D1Q96GG9 259 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 LRGUKQ96M69 825 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 MGME1Q9BQP7 344 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms