RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SPOCK2Q92563 424 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 ZNF653Q96CK0 615 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 MED8Q96G25 268 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 ZNF599Q96NL3 588 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 CARS2Q9HA77 564 aaKnown RBP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 RTN4Q9NQC3 1192 aaKnown RBP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 BOD1L1Q8NFC6 3051 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 PRAMEF33A0A0G2JMD5 474 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 B8ZZF3 427 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 NUDT21O43809 227 aaKnown RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 PRAMEF10O60809 474 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 SOCS5O75159 536 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 HEXIM1O94992 359 aaKnown RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 CPP00450 1065 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 LHCGRP22888 699 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 AMPD1P23109 780 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 ZNF135P52742 658 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 MAZP56270 477 aaKnown RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 TYRO3Q06418 890 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 TRAF2Q12933 501 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 ARHGEF7Q14155 803 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 PTPRRQ15256 657 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 DENND2CQ68D51 928 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 HEATR4Q86WZ0 1026 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 NRROSQ86YC3 692 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 LZTR1Q8N653 840 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 PDCD6IPQ8WUM4 868 aaKnown RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 GBP4Q96PP9 640 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 SEMA6CQ9H3T2 930 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 ZWILCHQ9H900 591 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 SPATS2LQ9NUQ6 558 aaKnown RBP16.11■□□□□ 0.17
COL7A1-204ENST00000462475 FOXJ2Q9P0K8 574 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 MYO1AQ9UBC5 1043 aa16.11■□□□□ 0.17
COL7A1-204ENST00000462475 H3BRJ5 948 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 PYCARD-AS1I3L0S3 204 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 NVLO15381 856 aaKnown RBP16.1■□□□□ 0.17
COL7A1-204ENST00000462475 FUCA1P04066 466 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 CEACAM5P06731 702 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 LIPCP11150 499 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 GZMAP12544 262 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 CCNB1P14635 433 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 VIPR1P32241 457 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 ETV3P41162 512 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 PRKCIP41743 596 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 MAXP61244 160 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 B4GALNT1Q00973 533 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 DPYSL2Q16555 572 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 TSR1Q2NL82 804 aaKnown RBP16.1■□□□□ 0.17
COL7A1-204ENST00000462475 MAP9Q49MG5 647 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 CCDC183Q5T5S1 534 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 PHF19Q5T6S3 580 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 HSD11B1LQ7Z5J1 315 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 KIAA1524Q8TCG1 905 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 GPBAR1Q8TDU6 330 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 DTD2Q96FN9 168 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 CSPG4P5Q96PW8 444 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 NUDCD1Q96RS6 583 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 MGME1Q9BQP7 344 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 TEX101Q9BY14 249 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 FRMD8Q9BZ67 464 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-204ENST00000462475 RDH14Q9HBH5 336 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 NOD2Q9HC29 1040 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 PHPT1Q9NRX4 125 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-204ENST00000462475 AIPL1Q9NZN9 384 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 SCINQ9Y6U3 715 aa16.1■□□□□ 0.17
COL7A1-204ENST00000462475 NPIPB15A6NHN6 443 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 PDE2AO00408 941 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 B4GAT1O43505 415 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 MAFKO60675 156 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 AK4P27144 223 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 PCK1P35558 622 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 HSPA9P38646 679 aaKnown RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 ARL4AP40617 200 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 GNPDA1P46926 289 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 MAPK10P53779 464 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 OR1D5P58170 312 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 CDK3Q00526 305 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 KLHL30Q0D2K2 578 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 C16orf72Q14CZ0 275 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 AMZ1Q400G9 498 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 ANO6Q4KMQ2 910 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 TMCO3Q6UWJ1 677 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 POLNQ7Z5Q5 900 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 TSPAN33Q86UF1 283 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 VASH2Q86V25 355 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 C17orf82Q86X59 251 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 ZFAND4Q86XD8 727 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 CBARPQ8N350 705 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 ZDHHC1Q8WTX9 485 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 HSPH1Q92598 858 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 USP7Q93009 1102 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 TMEM159Q96B96 161 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 CMKLR1Q99788 373 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 GSDMCQ9BYG8 508 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.09■□□□□ 0.17
COL7A1-204ENST00000462475 TAAR2Q9P1P5 351 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 SUFUQ9UMX1 484 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 ST14Q9Y5Y6 855 aa16.09■□□□□ 0.17
COL7A1-204ENST00000462475 SCN8AQ9UQD0 1980 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms