RNA–Protein interactions for RNA: ENST00000461608.1

HDAC6-212, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-212ENST00000461608 GPC4O75487 556 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 BEST1O76090 585 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 NKX2-2O95096 273 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 PGM3O95394 542 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 HIST1H2ABP04908 130 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 TMEM191BP0C7N4 346 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 FAM90A13PP0C7W8 464 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 FAM90A24PP0C7X0 464 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ARSBP15848 533 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 HIST1H2ADP20671 130 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ITGAXP20702 1163 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 EDN2P20800 178 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 UBA1P22314 1058 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ACSL1P33121 698 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SHMT1P34896 483 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 PPP3CCP48454 512 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 GALCP54803 685 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 MFAP4P55083 255 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 IKQ13123 557 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 CAPSQ13938 189 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SOWAHAQ2M3V2 549 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 COL28A1Q2UY09 1125 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SUPT20HL1Q3ZLR7 823 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 MANEAQ5SRI9 462 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 PXDC1Q5TGL8 231 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 KRT79Q5XKE5 535 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 GGNBP1Q5YKI7 109 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 NAA16Q6N069 864 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 LRRC8EQ6NSJ5 796 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SHC4Q6S5L8 630 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 QSOX2Q6ZRP7 698 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 DPPA4Q7L190 304 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 MON1BQ7L1V2 547 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 HIST3H2AQ7L7L0 130 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 KRT77Q7Z794 578 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ARID3BQ8IVW6 561 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 TMEM174Q8WUU8 243 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 NSMCE1Q8WV22 266 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 MSI2Q96DH6 328 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ZNF570Q96NI8 536 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 NUDCD1Q96RS6 583 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 BAG1Q99933 345 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 TMEM79Q9BSE2 394 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 TXLNGYQ9BZA5 131 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SIL1Q9H173 461 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 OSGEPL1Q9H4B0 414 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 LTB4R2Q9NPC1 389 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 TRNAU1APQ9NX07 287 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 CISD1Q9NZ45 108 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 CPSF2Q9P2I0 782 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 RNF7Q9UBF6 113 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 PLEKHB1Q9UF11 243 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 FBXL17Q9UF56 701 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 SEC63Q9UGP8 760 aaKnown RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 PCDHGB4Q9UN71 923 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 NFE2L3Q9Y4A8 694 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.11□□□□□ -1.91
HDAC6-212ENST00000461608 STON1Q9Y6Q2 735 aa3.11□□□□□ -1.91
HDAC6-212ENST00000461608 KAT6BQ8WYB5 2073 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 FAM237AA0A1B0GTK4 181 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 LRRC72A6NJI9 287 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 SNAP23O00161 211 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 P4HA2O15460 535 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MITFO75030 526 aaPredicted RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 JRKO75564 520 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 EPN2O95208 641 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 DNTTP04053 509 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MAOAP21397 527 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 RRM1P23921 792 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 HOXD9P28356 352 aaPredicted RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 FASLGP48023 281 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 ME1P48163 572 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 NRIP1P48552 1158 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 METAP2P50579 478 aaKnown RBP eCLIP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 PNLIPRP2P54317 469 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 TAS2R40P59535 323 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 SELENOVP59797 346 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 SSBP2P81877 361 aaPredicted RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MRPS5P82675 430 aaKnown RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 BAATQ14032 418 aaPredicted RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 IRF3Q14653 427 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 RBMS2Q15434 407 aaKnown RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 SRSF7Q16629 238 aaKnown RBP eCLIP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 Q4G0T1 1027 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 SGO1Q5FBB7 561 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 EFHC1Q5JVL4 640 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 RARS2Q5T160 578 aaKnown RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 DCAF12L2Q5VW00 463 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 PMS2CLQ68D20 193 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 DLK2Q6UY11 383 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 PQLC2Q6ZP29 291 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 CFAP77Q6ZQR2 320 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 TSPAN33Q86UF1 283 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 DNAAF5Q86Y56 855 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MB21D2Q8IYB1 491 aaPredicted RBP3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MMP21Q8N119 569 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 MCUQ8NE86 351 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 DENND1AQ8TEH3 1009 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 NLRP4Q96MN2 994 aa3.1□□□□□ -1.91
HDAC6-212ENST00000461608 PCGF1Q9BSM1 259 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms