RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SPATA9Q9BWV2 254 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 DGCR6LQ9BY27 220 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 NFKBIZQ9BYH8 718 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 FOXN3O00409 490 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 TFRCP02786 760 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 RB1P06400 928 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 USP17L8P0C7I0 530 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ADRA1DP25100 572 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 RASGEF1BQ0VAM2 473 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 LAPTM5Q13571 262 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 IL31Q6EBC2 164 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 GADL1Q6ZQY3 521 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 GPRIN3Q6ZVF9 776 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CYB5R4Q7L1T6 521 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 OR4A15Q8NGL6 344 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 DIRAS2Q96HU8 199 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 TEX51A0A1B0GUA7 166 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 F5H6K3 240 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 RAP2AP10114 183 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 KLRC3Q07444 240 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 RFTN1Q14699 578 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 NEPROQ6NW34 567 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CPSF7Q8N684 471 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 ENDOVQ8N8Q3 282 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 TRUB1Q8WWH5 349 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 IL1RL2Q9HB29 575 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 C3orf14Q9HBI5 128 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 USP20Q9Y2K6 914 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ADGRB2O60241 1585 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 SASH3O75995 380 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FGRP09769 529 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 TROAPQ12815 778 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 EIF2S3LQ2VIR3 472 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 OLFML2AQ68BL7 652 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 LRRN4CLQ8ND94 238 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CPA5Q8WXQ8 436 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 DPF2Q92785 391 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 C11orf24Q96F05 449 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 VPS35Q96QK1 796 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CDC6Q99741 560 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ISCA1Q9BUE6 129 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 MTA2O94776 668 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 NRIP1P48552 1158 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 OVGP1Q12889 678 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 GPR107Q5VW38 600 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 KAT2BQ92831 832 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 NKD2Q969F2 451 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 MAN1C1Q9NR34 630 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PRORSD1PA6NEY8 169 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 M0R233 179 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 RPL21P46778 160 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 HNRNPFP52597 415 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 GRIK2Q13002 908 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 NCCRP1Q6ZVX7 275 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 UBQLNLQ8IYU4 475 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 C11orf65Q8NCR3 313 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 TRPM4Q8TD43 1214 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 BAP1Q92560 729 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 C18orf25Q96B23 403 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 CDH22Q9UJ99 828 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PCDHB1Q9Y5F3 818 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FAM196BA6NMK8 535 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 OR6A2O95222 327 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ZBTB11O95625 1053 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 CST1P01037 141 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CD40LGP29965 261 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SOX11P35716 441 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FSTL1Q12841 308 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 DLG2Q15700 870 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FAM182BQ5T319 152 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 HDDC3Q8N4P3 179 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SPOCK2Q92563 424 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CNDP2Q96KP4 475 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 SEPHS2Q99611 448 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 C2orf49Q9BVC5 232 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 PCBD2Q9H0N5 130 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ARHGAP20Q9P2F6 1191 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 UXTQ9UBK9 157 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 CHKBQ9Y259 395 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SEC22BO75396 215 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PTPN11Q06124 597 aaPredicted RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 EIPR1Q53HC9 387 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 GMCL1P1Q8NEA9 526 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 TLCD1Q96CP7 247 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 CHST12Q9NRB3 414 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 WRBO00258 174 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PRODHO43272 600 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 UQCRC1P31930 480 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FNDC8Q8TC99 324 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 ZNF570Q96NI8 536 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 LMAN2LQ9H0V9 348 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SCUBE2Q9NQ36 999 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 KCNE2Q9Y6J6 123 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PRAMEF1O95521 474 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 NKAPLQ5M9Q1 402 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 IDNKQ5T6J7 187 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 FAAH2Q6GMR7 532 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 AGMOQ6ZNB7 445 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms