RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 HECTD2Q5U5R9 776 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CERS6Q6ZMG9 384 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MILR1Q7Z6M3 343 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ADAMTSL2Q86TH1 951 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 UNC5BQ8IZJ1 945 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ATXN2LQ8WWM7 1075 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 HERVK_113Q902F9 699 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 C12orf65Q9H3J6 166 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 SLCO1B3Q9NPD5 702 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 GPSM3Q9Y4H4 160 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ARL5AQ9Y689 179 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CFAP73A6NFT4 308 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 QSOX1O00391 747 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PRAMEF11O60813 436 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 E2F6O75461 281 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MAT2AP31153 395 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 NUDT2P50583 147 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 COPAP53621 1224 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PRKAA2P54646 552 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SKOR1P84550 965 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SCAPQ12770 1279 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 GRSF1Q12849 480 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIG4-202ENST00000405925 SLC10A2Q12908 348 aaPredicted RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 DNAL1Q4LDG9 190 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CACHD1Q5VU97 1274 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PHOSPHO2Q8TCD6 241 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 NSL1Q96IY1 281 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 NMRK1Q9NWW6 199 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 RABGEF1Q9UJ41 708 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 DOCK3Q8IZD9 2030 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 GNG14A0A1W2PPG7 69 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 DCLK1O15075 740 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SLC31A1O15431 190 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 HNRNPCL1O60812 293 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 RPN2P04844 631 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 DDX5P17844 614 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 KCNA5P22460 613 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 LIMK2P53671 638 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CDH13P55290 713 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 IRF8Q02556 426 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 RASA2Q15283 850 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SLC1A5Q15758 541 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ARSIQ5FYB1 569 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 LYPLAL1Q5VWZ2 237 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 RGS9BPQ6ZS82 235 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MMAAQ8IVH4 418 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 AHI1Q8N157 1196 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 NPWQ8N729 165 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MRPL43Q8N983 215 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 SKA1Q96BD8 255 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PRPF18Q99633 342 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 GPR21Q99679 349 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CSNK1G1Q9HCP0 422 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 POLR3BQ9NW08 1133 aaPredicted RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 SLC17A6Q9P2U8 582 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 OR2AG2A6NM03 316 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ZNF487B1APH4 448 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CACNB4O00305 520 aaPredicted RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 ALDH1A2O94788 518 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 EPB42P16452 691 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MAP1BP46821 2468 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 KCNJ11Q14654 390 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 EML3Q32P44 896 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PITRM1Q5JRX3 1037 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 VITQ6UXI7 678 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 KIAA0408Q6ZU52 694 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 UMODL1-AS1Q8N2C9 162 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 VPS37AQ8NEZ2 397 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 TRPC4APQ8TEL6 797 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 LINC01599Q8WXQ3 324 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SPDL1Q96EA4 605 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 MRPL57Q9BQC6 102 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 KXD1Q9BQD3 176 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 WDR6Q9NNW5 1121 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 SPHK2Q9NRA0 654 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CXXC1Q9P0U4 656 aaPredicted RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 ANGPTL2Q9UKU9 493 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ASF1AQ9Y294 204 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 CCDC162PA2VCL2 907 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 CHUKO15111 745 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 KPNA5O15131 536 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 SLC7A4O43246 635 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 HLA-EP13747 358 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 GKP32189 559 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 GRIA4P48058 902 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 GSCP56915 257 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 STX5Q13190 355 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 SIRPB2Q5JXA9 342 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 KIAA0930Q6ICG6 404 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 ARFGAP1Q8N6T3 406 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PCDH20Q8N6Y1 951 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 KLK6Q92876 244 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 CATSPER2Q96P56 530 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 RBBP8Q99708 897 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 COG4Q9H9E3 785 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PARVBQ9HBI1 364 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PHPT1Q9NRX4 125 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 HAO1Q9UJM8 370 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PNMA8BQ9ULN7 279 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms