RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ACSL3O95573 720 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 ELFN1P0C7U0 828 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 PAMP19021 973 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 LHCGRP22888 699 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 HMGCLP35914 325 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 PXNP49023 591 aaPredicted RBP18.08■□□□□ 0.48
SDC1-203ENST00000403076 PTPRCAPQ14761 206 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 ACOX1Q15067 660 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 CNGA3Q16281 694 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 CDKN3Q16667 212 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 TMEM52BQ4KMG9 183 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 SPANXN3Q5MJ09 141 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 C3orf62Q6ZUJ4 267 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 OR4K2Q8NGD2 314 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 OR13C4Q8NGS5 318 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 MFSD3Q96ES6 412 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 DNAJC1Q96KC8 554 aaKnown RBP18.08■□□□□ 0.48
SDC1-203ENST00000403076 TPSD1Q9BZJ3 242 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 ITM2CQ9NQX7 267 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 SLC2A6Q9UGQ3 507 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3DA0A087WVF3 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3IA0A087WXS9 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3EA0A087X179 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3KA0A087X1G2 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3FA6NER0 549 aaPredicted RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3LB9A6J9 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 SPINT1O43278 529 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TSPAN6O43657 245 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 AP1G1O43747 822 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 USP1O94782 785 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 PAPSS2O95340 614 aaPredicted RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3HP0C7X1 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 C7P10643 843 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 SSTR1P30872 391 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 PHBP35232 272 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 LIG3P49916 1009 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 ZNF140P52738 457 aaPredicted RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 PTSQ03393 145 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 RALGDSQ12967 914 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 CRYMQ14894 314 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3GQ6DHY5 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3CQ6IPX1 549 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 ESRP1Q6NXG1 681 aaKnown RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 LIPIQ6XZB0 460 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TMEM135Q86UB9 458 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 TBC1D3Q8IZP1 549 aaPredicted RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.07■□□□□ 0.48
SDC1-203ENST00000403076 HNRNPLLQ8WVV9 542 aaKnown RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 TXLNGYQ9BZA5 131 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 BTBD1Q9H0C5 482 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 LRRC4CQ9HCJ2 640 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 ARFGAP3Q9NP61 516 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 PKD2L2Q9NZM6 624 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 EBF1Q9UH73 591 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 CYP8B1Q9UNU6 501 aa18.07■□□□□ 0.48
SDC1-203ENST00000403076 FNDC3AQ9Y2H6 1198 aaKnown RBP18.07■□□□□ 0.48
SDC1-203ENST00000403076 FAM47DPA6NHR8 397 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 PLRG1O43660 514 aaKnown RBP18.06■□□□□ 0.48
SDC1-203ENST00000403076 LZTS3O60299 673 aaPredicted RBP18.06■□□□□ 0.48
SDC1-203ENST00000403076 MMP20O60882 483 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 GSTA2P09210 222 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 HADHAP40939 763 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 TAS2R38P59533 333 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 PRAMEP78395 509 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 MAMSTRQ6ZN01 415 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 OR6P1Q8NGX9 317 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 GSDMBQ8TAX9 411 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 PEX13Q92968 403 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 EID2BQ96D98 161 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 FCRL3Q96P31 734 aaPredicted RBP18.06■□□□□ 0.48
SDC1-203ENST00000403076 CD93Q9NPY3 652 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 PPANQ9NQ55 473 aaKnown RBP18.06■□□□□ 0.48
SDC1-203ENST00000403076 NLE1Q9NVX2 485 aaPredicted RBP18.06■□□□□ 0.48
SDC1-203ENST00000403076 IL17CQ9P0M4 197 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 RIMKLBQ9ULI2 386 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 FAM169AQ9Y6X4 670 aa18.06■□□□□ 0.48
SDC1-203ENST00000403076 H0Y858 1186 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 CCL22O00626 93 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 LAMTOR5O43504 91 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 ZNF217O75362 1048 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 SPAG6O75602 509 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 RPP40O75818 363 aaKnown RBP18.05■□□□□ 0.48
SDC1-203ENST00000403076 C1SP09871 688 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 H2AFXP16104 143 aaPredicted RBP18.05■□□□□ 0.48
SDC1-203ENST00000403076 TSHRP16473 764 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 OXTRP30559 389 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 STC1P52823 247 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 ADPRHP54922 357 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 GPX6P59796 221 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 TMEM31Q5JXX7 168 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 STEAP4Q687X5 459 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 FBXO38Q6PIJ6 1188 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 HSD11B1LQ7Z5J1 315 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 RASSF3Q86WH2 238 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 UHMK1Q8TAS1 419 aaKnown RBP18.05■□□□□ 0.48
SDC1-203ENST00000403076 HDAC10Q969S8 669 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 TTC28Q96AY4 2481 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 TBATAQ96M53 351 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 SGK2Q9HBY8 427 aa18.05■□□□□ 0.48
SDC1-203ENST00000403076 TREX1Q9NSU2 369 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms