RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BCKDHBP21953 392 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RPS3P23396 243 aaKnown RBP eCLIP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RASA2Q15283 850 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 KIAA0930Q6ICG6 404 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 PPP1R21Q6ZMI0 780 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DDHD1Q8NEL9 900 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 OR13J1Q8NGT2 312 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 ENAMQ9NRM1 1142 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DNAAF2Q9NVR5 837 aaKnown RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 B4GALT6Q9UBX8 382 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 TMPRSS11EQ9UL52 423 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 A0A1W2PP55 124 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 TCRBV7S3A2A0A539 114 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 YKT6O15498 198 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 WISP3O95389 354 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 UGT2B4P06133 528 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 RETP07949 1114 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ETS1P14921 441 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ARNTP27540 789 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 RPL21P46778 160 aaKnown RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 SCNN1BP51168 640 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 MAXP61244 160 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 RACK1P63244 317 aaKnown RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 NR1D2Q14995 579 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 BCL7AQ4VC05 210 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 PCID2Q5JVF3 399 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ARHGEF18Q6ZSZ5 1173 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 OXR1Q8N573 874 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 GPR161Q8N6U8 529 aaKnown RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 TOE1Q96GM8 510 aaKnown RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 BMFQ96LC9 184 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 SERPINB12Q96P63 405 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 RAB17Q9H0T7 212 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ZNF148Q9UQR1 794 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ADAMTS20P59510 1910 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 BDP1A6H8Y1 2624 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ZCWPW2A0A1B0GU75 182 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 EFCAB8A8MWE9 144 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ACSL1P33121 698 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 PPP2CBP62714 309 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 PPP2CAP67775 309 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 PEX6Q13608 980 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 CUL1Q13616 776 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 SIM2Q14190 667 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 SETMARQ53H47 684 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ANKRD22Q5VYY1 191 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 CACTIN-AS1Q8N1I8 211 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 AGAP3Q96P47 875 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 TM6SF2Q9BZW4 377 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 DDX47Q9H0S4 455 aaKnown RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 SLC6A17Q9H1V8 727 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 FAM114A2Q9NRY5 505 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 POLR3BQ9NW08 1133 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-202ENST00000394943 MOCS1Q9NZB8 636 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 PCDHGC4Q9Y5F7 938 aa7.01□□□□□ -1.29
LIMA1-202ENST00000394943 ZNF806P0C7X5 589 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ZSCAN5DPP0CG00 497 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 C6P13671 934 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 HNRNPA2B1P22626 353 aaKnown RBP7□□□□□ -1.29
LIMA1-202ENST00000394943 GKP32189 559 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 DEKP35659 375 aaKnown RBP7□□□□□ -1.29
LIMA1-202ENST00000394943 IGFALSP35858 605 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CTSKP43235 329 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 KCNJ1P48048 391 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 NXPH1P58417 271 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 GPR33Q49SQ1 333 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 TSTD2Q5T7W7 516 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 LYPLAL1Q5VWZ2 237 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CEP128Q6ZU80 1094 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 HSD11B1LQ7Z5J1 315 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 HEXDCQ8WVB3 486 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ISL2Q96A47 359 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ABCG8Q9H221 673 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 C6orf106Q9H6K1 298 aaPredicted RBP7□□□□□ -1.29
LIMA1-202ENST00000394943 C10orf88Q9H8K7 445 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CSNK1G3Q9Y6M4 447 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 FAM169AQ9Y6X4 670 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 HEATR9A2RTY3 570 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 FAM86C2PA6NEL3 165 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 TTI1O43156 1089 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CTIFO43310 598 aaKnown RBP7□□□□□ -1.29
LIMA1-202ENST00000394943 SGTAO43765 313 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 AGTP01019 485 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ABHD2P08910 425 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 FOXN2P32314 431 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 LIG3P49916 1009 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 NAB1Q13506 487 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 SHBQ15464 509 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 PNCKQ6P2M8 343 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ULK4Q96C45 1275 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 BIRC7Q96CA5 298 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 ZSCAN5AQ9BUG6 496 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 SLC17A9Q9BYT1 436 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 TSPYL1Q9H0U9 437 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 GGT7Q9UJ14 662 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 PCOLCE2Q9UKZ9 415 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 MAP3K6O95382 1288 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CRTAMO95727 393 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 TTC4O95801 387 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 WNT1P04628 370 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms