RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PTPRNQ16849 979 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 LSM12Q3MHD2 195 aaKnown RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 ISL2Q96A47 359 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 PLD4Q96BZ4 506 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 VWCEQ96DN2 955 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 FEM1CQ96JP0 617 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 GPR78Q96P69 363 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 LENG8Q96PV6 779 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 KLF16Q9BXK1 252 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 HCFC1R1Q9NWW0 138 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 EVLQ9UI08 416 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 ILVBLA1L0T0 632 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 MROH6A6NGR9 719 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 HDAC3O15379 428 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 SMAD6O43541 496 aaKnown RBP11.15□□□□□ -0.63
TCOF1-203ENST00000394269 RPP40O75818 363 aaKnown RBP11.15□□□□□ -0.63
TCOF1-203ENST00000394269 IL1BP01584 269 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 CLCN5P51795 746 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 RIPK1Q13546 671 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 ACSBG2Q5FVE4 666 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 LRRC73Q5JTD7 316 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 TCHHL1Q5QJ38 904 aaPredicted RBP11.15□□□□□ -0.63
TCOF1-203ENST00000394269 SWT1Q5T5J6 900 aaKnown RBP11.15□□□□□ -0.63
TCOF1-203ENST00000394269 TPGS2Q68CL5 300 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 TMEM150AQ86TG1 271 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 SCUBE1Q8IWY4 988 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 BBS7Q8IWZ6 715 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 DEFB107AQ8IZN7 70 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 TSPAN17Q96FV3 270 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 FEM1AQ9BSK4 669 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 MCMBPQ9BTE3 642 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 DRC3Q9H069 523 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 MFSD1Q9H3U5 465 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 PDFQ9HBH1 243 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 IGSF5Q9NSI5 407 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 NOP53Q9NZM5 478 aaKnown RBP11.15□□□□□ -0.63
TCOF1-203ENST00000394269 SSX2IPQ9Y2D8 614 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 RAP2CQ9Y3L5 183 aa11.15□□□□□ -0.63
TCOF1-203ENST00000394269 PTPRDP23468 1912 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ANKRD12Q6UB98 2062 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 PPP6CO00743 305 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 CIB2O75838 187 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 PRAMEF12O95522 483 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ATP5F1P24539 256 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 PRKAA1Q13131 559 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 MSLNQ13421 630 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 FRG1Q14331 258 aaKnown RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 PLPP4Q5VZY2 271 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 CXorf57Q6NSI4 855 aaKnown RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ACAD11Q709F0 780 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 GAREM2Q75VX8 874 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 DCBLD1Q8N8Z6 715 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 KLHL23Q8NBE8 558 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ERLEC1Q96DZ1 483 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 A0A087X1B8 175 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ABHD14A-ACY1A0A1B0GW23 586 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ANKRD66B4E2M5 251 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 RFPL2O75678 378 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 C8AP07357 584 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 MC4RP32245 332 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 TRAF2Q12933 501 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 TUBB3Q13509 450 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 RAB33AQ14088 237 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF549Q6P9A3 640 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 PAQR3Q6TCH7 311 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 KIAA0408Q6ZU52 694 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 ARHGAP24Q8N264 748 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 TOX2Q96NM4 488 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 MRM3Q9HC36 420 aaKnown RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 VPS51Q9UID3 782 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 CDYLQ9Y232 598 aa11.14□□□□□ -0.63
TCOF1-203ENST00000394269 NYNRINQ9P2P1 1898 aaKnown RBP11.14□□□□□ -0.63
TCOF1-203ENST00000394269 A8MT66 165 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 UBXN8O00124 270 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 NRG2O14511 850 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF195O14628 629 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PEX11AO75192 247 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 GPC4O75487 556 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 IPO13O94829 963 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 LAG3P18627 525 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TCN1P20061 433 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 KPNA2P52292 529 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 LRRC36Q1X8D7 754 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TSNAXIP1Q2TAA8 658 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 C6orf163Q5TEZ5 329 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 EPGNQ6UW88 154 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 FRMD7Q6ZUT3 714 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PIANPQ8IYJ0 282 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 CMTM8Q8IZV2 173 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 MGME1Q9BQP7 344 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 ADGRE3Q9BY15 652 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 RNPEPL1Q9HAU8 725 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 COMMD8Q9NX08 183 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 LSM7Q9UK45 103 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 DOCK6Q96HP0 2047 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 SUPT3HB4E1H0 165 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 MATN2O00339 956 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 HNRNPCL1O60812 293 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 SUPT3HO75486 399 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PRLP01236 227 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms