RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SEL1L3Q68CR1 1132 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TMEM26Q6ZUK4 368 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 ANKK1Q8NFD2 765 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 RXFP2Q8WXD0 754 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 SUSD3Q96L08 255 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 FAM193BQ96PV7 902 aaPredicted RBP11.17□□□□□ -0.62
CUX1-204ENST00000393824 CTRCQ99895 268 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 C20orf96Q9NUD7 363 aaPredicted RBP11.17□□□□□ -0.62
CUX1-204ENST00000393824 ZNF358Q9NW07 568 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 DKK3Q9UBP4 350 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PRKAG2Q9UGJ0 569 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 ADAM28Q9UKQ2 775 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 SARDHQ9UL12 918 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 KIAA1257Q9ULG3 409 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PCDHGA7Q9Y5G6 932 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 CPQQ9Y646 472 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TSC2P49815 1807 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 SLCO1B7G3V0H7 640 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 SOCS2O14508 198 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TRIM24O15164 1050 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PFDN6O15212 129 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 ZNF182P17025 639 aaPredicted RBP11.17□□□□□ -0.62
CUX1-204ENST00000393824 CCNA2P20248 432 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 RGS7P49802 495 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PSME3P61289 254 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 NDUFA5Q16718 116 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 GOLGA7BQ2TAP0 167 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PMF1Q6P1K2 205 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 CAMK1DQ8IU85 385 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TNS4Q8IZW8 715 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 CRYBG2Q8N1P7 616 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TTC39CQ8N584 583 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 DPF3Q92784 378 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TMA16Q96EY4 203 aaKnown RBP11.17□□□□□ -0.62
CUX1-204ENST00000393824 PCED1BQ96HM7 432 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 TCF12Q99081 682 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 GATA5Q9BWX5 397 aaPredicted RBP11.17□□□□□ -0.62
CUX1-204ENST00000393824 SNX25Q9H3E2 840 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 ARMC1Q9NVT9 282 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 SMOXQ9NWM0 555 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 VTI1BQ9UEU0 232 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 PSAT1Q9Y617 370 aa11.17□□□□□ -0.62
CUX1-204ENST00000393824 GRXCR1A8MXD5 290 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 GRID2O43424 1007 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 KDM1AO60341 852 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 FGBP02675 491 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 GNAO1P09471 354 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 MYOGP15173 224 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 TFEBP19484 476 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 GARSP41250 739 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 GRIA1P42261 906 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 GSSP48637 474 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 DMPKQ09013 629 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 MERTKQ12866 999 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 KCNJ8Q15842 424 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 SLC36A3Q495N2 470 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 FAM171A1Q5VUB5 890 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 TMEM214Q6NUQ4 689 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 IGFN1Q86VF2 1251 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 MINDY2Q8NBR6 621 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 PCDH19Q8TAB3 1148 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 PTCD2Q8WV60 388 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 LPGAT1Q92604 370 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 PBXIP1Q96AQ6 731 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 NSMCE3Q96MG7 304 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 UROC1Q96N76 676 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 PKMYT1Q99640 499 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 NPAS2Q99743 824 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 ADI1Q9BV57 179 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 B3GNT5Q9BYG0 378 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 YTHDF1Q9BYJ9 559 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 NAA50Q9GZZ1 169 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 PCDHAC1Q9H158 963 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 POLR1BQ9H9Y6 1135 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 CD320Q9NPF0 282 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 EIF2B3Q9NR50 452 aaKnown RBP11.16□□□□□ -0.62
CUX1-204ENST00000393824 ADA2Q9NZK5 511 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 SLC17A6Q9P2U8 582 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 CARD8Q9Y2G2 431 aa11.16□□□□□ -0.62
CUX1-204ENST00000393824 WDR27A2RRH5 827 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 FAM47E-STBD1D6RA91 191 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 NEMP1O14524 444 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CLPXO76031 633 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 TPPPO94811 219 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 GJB5O95377 273 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CYP11A1P05108 521 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 C7P10643 843 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 GP5P40197 560 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 TRAF2Q12933 501 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 FAAH2Q6GMR7 532 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 OVOS1Q6IE37 1185 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 LCLAT1Q6UWP7 414 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PTAR1Q7Z6K3 402 aaPredicted RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 UNC93AQ86WB7 457 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 SLC7A5P1Q8MH63 180 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PLD6Q8N2A8 252 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 ADAM32Q8TC27 787 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 NACC2Q96BF6 587 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 FEM1CQ96JP0 617 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms