RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MFRPQ9BY79 579 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ABCF3Q9NUQ8 709 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 MOCS1Q9NZB8 636 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 KLHL14Q9P2G3 628 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 SLC17A7Q9P2U7 560 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 PPM1HQ9ULR3 514 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 PHTF1Q9UMS5 762 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TCRBV21S2A2A0A5A6 115 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 UGT1A9O60656 530 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 EDF1O60869 148 aaKnown RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 SIN3BO75182 1162 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TMCC1O94876 653 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 IGSF6O95976 241 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 PEX11BO96011 259 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 GSTA1P08263 222 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 CCNB1P14635 433 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 PGAM1P18669 254 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 C5AR1P21730 350 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 MGAT1P26572 445 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 SUOXP51687 545 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 COPAP53621 1224 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 SESN2P58004 480 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 CSTF1Q05048 431 aaKnown RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 TTC31Q49AM3 519 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 CCDC63Q8NA47 563 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ZBTB44Q8NCP5 570 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ZNF75CPQ92670 426 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 SIPA1Q96FS4 1042 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 OXNAD1Q96HP4 312 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 PPP1R16AQ96I34 528 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ZNF641Q96N77 438 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 HEPHQ9BQS7 1158 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 NAT9Q9BTE0 207 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 CINPQ9BW66 212 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 VPS11Q9H270 941 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 UGT1A7Q9HAW7 530 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 UGT1A10Q9HAW8 530 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 UGT1A8Q9HAW9 530 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 SLCO1B3Q9NPD5 702 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ITM2CQ9NQX7 267 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 SLC12A4Q9UP95 1085 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 CUL9Q8IWT3 2517 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 DOCK4Q8N1I0 1966 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 COPEO14579 308 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 AXIN1O15169 862 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 SLC7A4O43246 635 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 SMAD6O43541 496 aaKnown RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 AP2A1O95782 977 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 DNTTP04053 509 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 DHRS4L1P0CG22 281 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 ACADMP11310 421 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 GABRG2P18507 467 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 ETV4P43268 484 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 SERPINB9P50453 376 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 PTPN5P54829 565 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 RHOAP61586 193 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 AP1S1P61966 158 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 CRADDP78560 199 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 ZNF235Q14590 738 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 CYTH1Q15438 398 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 MYLK3Q32MK0 819 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 ALG1LQ6GMV1 187 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 ITPRIPL1Q6GPH6 555 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 KIAA1211LQ6NV74 962 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 GBP7Q8N8V2 638 aaPredicted RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 RMDN2Q96LZ7 410 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 PPP1R2P1Q96PQ5 205 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 FAM129BQ96TA1 746 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 MGME1Q9BQP7 344 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 GORASP1Q9BQQ3 440 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 MKRN2Q9H000 416 aaKnown RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 IQCGQ9H095 443 aaKnown RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 PCED1AQ9H1Q7 454 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 C12orf65Q9H3J6 166 aaKnown RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 PIH1D1Q9NWS0 290 aaKnown RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 SYBUQ9NX95 663 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 HECAQ9UBI9 543 aaPredicted RBP10.24□□□□□ -0.77
VPS53-202ENST00000389040 IL36AQ9UHA7 158 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 TRHDEQ9UKU6 1024 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 FZD4Q9ULV1 537 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 NCKAP1Q9Y2A7 1128 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 HCN4Q9Y3Q4 1203 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 MYOFQ9NZM1 2061 aa10.24□□□□□ -0.77
VPS53-202ENST00000389040 WDR91A4D1P6 747 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 K7ERQ8 282 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 RFPL1O75677 317 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NEBLO76041 1014 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SP9P0CG40 484 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 HLA-EP13747 358 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CNTFP26441 200 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CCNFP41002 786 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 WASP42768 502 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 ZBTB17Q13105 803 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 BMPR2Q13873 1038 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CRYMQ14894 314 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CST6Q15828 149 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SLC14A2Q15849 920 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SLC36A4Q6YBV0 504 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 DPY19L3Q6ZPD9 716 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms