RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 LHCGRP22888 699 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 HMGCLP35914 325 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 SATB1Q01826 763 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 CROCCP2Q86T23 111 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 TDRPQ86YL5 185 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 ZNF687Q8N1G0 1237 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 RPLP0P6Q8NHW5 317 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 DCAKDQ8WVC6 231 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 CDKL2Q92772 493 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 ARL8AQ96BM9 186 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 CDKN2AIPNLQ96HQ2 116 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 AGAP2Q99490 1192 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 CENPHQ9H3R5 247 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 SUDS3Q9H7L9 328 aaPredicted RBP19.91■□□□□ 0.78
CLN3-205ENST00000359984 PPCSQ9HAB8 311 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 UGT1A7Q9HAW7 530 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 UGT1A10Q9HAW8 530 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 UGT1A8Q9HAW9 530 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 TMBIM4Q9HC24 238 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 BPIFA1Q9NP55 256 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 IARS2Q9NSE4 1012 aaKnown RBP19.91■□□□□ 0.78
CLN3-205ENST00000359984 EURLQ9NYK6 297 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 CKAP5Q14008 2032 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 PLK4O00444 970 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 STX7O15400 261 aaKnown RBP19.9■□□□□ 0.78
CLN3-205ENST00000359984 SLC7A4O43246 635 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 COL9A1P20849 921 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 XPAP23025 273 aaPredicted RBP19.9■□□□□ 0.78
CLN3-205ENST00000359984 MSH2P43246 934 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 STARD3Q14849 445 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 TERF2Q15554 542 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 TEDDM1Q5T9Z0 273 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 FAM46CQ5VWP2 391 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 MARK2Q7KZI7 788 aaKnown RBP19.9■□□□□ 0.78
CLN3-205ENST00000359984 OR6P1Q8NGX9 317 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 ATXN2LQ8WWM7 1075 aaKnown RBP19.9■□□□□ 0.78
CLN3-205ENST00000359984 PPP1R16AQ96I34 528 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 ZFATQ9P243 1243 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 FBXL21Q9UKT6 434 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 CCDC162PA2VCL2 907 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 GOLGA6L10A6NI86 522 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 RNASEH1O60930 286 aaKnown RBP19.9■□□□□ 0.78
CLN3-205ENST00000359984 CDH16O75309 829 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 FAM155BO75949 473 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 CHRNB1P11230 501 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 COPAP53621 1224 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 PRAMEP78395 509 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 NAB1Q13506 487 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 CST6Q15828 149 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 LRRC66Q68CR7 880 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 ADGRD1Q6QNK2 874 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 SLC26A11Q86WA9 606 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 GOLGA6L1Q8N7Z2 621 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 OR2T3Q8NH03 318 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 MFSD1Q9H3U5 465 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 CD248Q9HCU0 757 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 MED4Q9NPJ6 270 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 PKP3Q9Y446 797 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 PSAT1Q9Y617 370 aa19.9■□□□□ 0.78
CLN3-205ENST00000359984 OR51F1A6NGY5 319 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 CYP2A6P11509 494 aaPredicted RBP19.89■□□□□ 0.77
CLN3-205ENST00000359984 VIPR1P32241 457 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 THOC5Q13769 683 aaKnown RBP19.89■□□□□ 0.77
CLN3-205ENST00000359984 RASA2Q15283 850 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 HSF5Q4G112 596 aaPredicted RBP19.89■□□□□ 0.77
CLN3-205ENST00000359984 NEPROQ6NW34 567 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 FBXL19Q6PCT2 694 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 CYP4X1Q8N118 509 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 ASB2Q96Q27 587 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 HDAC8Q9BY41 377 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 DYRK4Q9NR20 520 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 PSMC3IPQ9P2W1 217 aaPredicted RBP19.89■□□□□ 0.77
CLN3-205ENST00000359984 TBK1Q9UHD2 729 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 LGALS13Q9UHV8 139 aa19.89■□□□□ 0.77
CLN3-205ENST00000359984 MTF2Q9Y483 593 aaPredicted RBP19.89■□□□□ 0.77
CLN3-205ENST00000359984 POLR3GO15318 223 aaPredicted RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 MID1O15344 667 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 GOT2P00505 430 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 INHBAP08476 426 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 NFKBIAP25963 317 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 STARD6P59095 220 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 RPS14P62263 151 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 PTSQ03393 145 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 ZNF776Q68DI1 518 aaPredicted RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 ERN2Q76MJ5 926 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 PTAR1Q7Z6K3 402 aaPredicted RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 CACUL1Q86Y37 369 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 CNTN4Q8IWV2 1026 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 PGM2Q96G03 612 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 MKRN2Q9H000 416 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 BCCIPQ9P287 314 aaKnown RBP eCLIP19.88■□□□□ 0.77
CLN3-205ENST00000359984 FKBPLQ9UIM3 349 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 IKBKGQ9Y6K9 419 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 RGS16O15492 202 aaPredicted RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 SPINT1O43278 529 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 ADH1BP00325 375 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 ADRB3P13945 408 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 TARSP26639 723 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 MMP12P39900 470 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 HADHAP40939 763 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms