RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TPX2Q9ULW0 747 aaKnown RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 LRRK1Q38SD2 2015 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 TNRC6BQ9UPQ9 1833 aaKnown RBP22.16■■□□□ 1.14
SHMT1-203ENST00000354098 GON4LQ3T8J9 2241 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 TPSB2P20231 275 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 STC1P52823 247 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 TPSAB1Q15661 275 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 PPP1R21Q6ZMI0 780 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 TMC3Q7Z5M5 1100 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 ZCCHC9Q8N567 271 aaKnown RBP22.16■■□□□ 1.14
SHMT1-203ENST00000354098 CCHCR1Q8TD31 782 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 CENPTQ96BT3 561 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 LOXL4Q96JB6 756 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 SLC6A18Q96N87 628 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 GPR63Q9BZJ6 419 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 TRIM31Q9BZY9 425 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 ARRDC1-AS1Q9H2J1 176 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 MBNL1Q9NR56 388 aaKnown RBP22.16■■□□□ 1.14
SHMT1-203ENST00000354098 CD84Q9UIB8 345 aa22.16■■□□□ 1.14
SHMT1-203ENST00000354098 PSMD11O00231 422 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 BUD23O43709 281 aaKnown RBP22.15■■□□□ 1.14
SHMT1-203ENST00000354098 TMEM63AO94886 807 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 EPN2O95208 641 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 LMNAP02545 664 aaKnown RBP22.15■■□□□ 1.14
SHMT1-203ENST00000354098 MAGEA6P43360 314 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 CCDC6Q16204 474 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 WSCD2Q2TBF2 565 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 TECPR1Q7Z6L1 1165 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 SYT12Q8IV01 421 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 TTC30BQ8N4P2 665 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 DNAAF3Q8N9W5 541 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 TP53I13Q8NBR0 393 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-203ENST00000354098 ASB12Q8WXK4 309 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 TM9SF3Q9HD45 589 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 CASS4Q9NQ75 786 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 DMTF1Q9Y222 760 aa22.15■■□□□ 1.14
SHMT1-203ENST00000354098 GPR179Q6PRD1 2367 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 PLXNA2O75051 1894 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CTAGE15A4D2H0 777 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 PRAMEF26H0Y7S4 382 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 H0Y8X5 98 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CTAGE8P0CG41 777 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 HNRNPA2B1P22626 353 aaKnown RBP22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CLDN2P57739 230 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CDH17Q12864 832 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 MTM1Q13496 603 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 AGERQ15109 404 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 ZNF534Q76KX8 674 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 GLT6D1Q7Z4J2 308 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 MAATS1Q7Z4T9 603 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CTAGE6Q86UF2 777 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CTAGE4Q8IX94 777 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 TMEM145Q8NBT3 493 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 NOA1Q8NC60 698 aaKnown RBP22.14■■□□□ 1.14
SHMT1-203ENST00000354098 MNS1Q8NEH6 495 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 LENG8Q96PV6 779 aaPredicted RBP22.14■■□□□ 1.14
SHMT1-203ENST00000354098 SRPK1Q96SB4 655 aaKnown RBP22.14■■□□□ 1.14
SHMT1-203ENST00000354098 CARD6Q9BX69 1037 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 KCTD3Q9Y597 815 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 ARL5AQ9Y689 179 aa22.14■■□□□ 1.14
SHMT1-203ENST00000354098 PROB1E7EW31 1015 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 DNALI1O14645 258 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-203ENST00000354098 NUDT1P36639 197 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 PTPRCAPQ14761 206 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 POU6F1Q14863 301 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 LRRC14Q15048 493 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 CERCAMQ5T4B2 595 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 RNASEH2BQ5TBB1 312 aaKnown RBP22.14■■□□□ 1.13
SHMT1-203ENST00000354098 PEAR1Q5VY43 1037 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-203ENST00000354098 LAYNQ6UX15 382 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 PELI3Q8N2H9 469 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 NAT8LQ8N9F0 302 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 DTD2Q96FN9 168 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 HINFPQ9BQA5 517 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 SMOC1Q9H4F8 434 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 TRABDQ9H4I3 376 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 BPIFA1Q9NP55 256 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 AASDHPPTQ9NRN7 309 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 HACD3Q9P035 362 aa22.14■■□□□ 1.13
SHMT1-203ENST00000354098 POM121BA6NF01 834 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 FAM187AA6NFU0 413 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 PATE3B3GLJ2 98 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 GOLGA8MH3BSY2 632 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 BCAT2O15382 392 aaPredicted RBP22.13■■□□□ 1.13
SHMT1-203ENST00000354098 AKT2P31751 481 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 SPINT3P49223 89 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 CDK16Q00536 496 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 IRF4Q15306 451 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 IZUMO3Q5VZ72 239 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 PPIL6Q8IXY8 311 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 PLA2G15Q8NCC3 412 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 BRSK1Q8TDC3 778 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 SCAMP4Q969E2 229 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 NUS1Q96E22 293 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 BMFQ96LC9 184 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 LRRC1Q9BTT6 524 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 SNX24Q9Y343 169 aa22.13■■□□□ 1.13
SHMT1-203ENST00000354098 FRYLO94915 3013 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 EFCAB8A8MWE9 144 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 AVILO75366 819 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms