RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SYNDIG1LA6NDD5 238 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DCLK1O15075 740 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 MAGP20916 626 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GLUD2P49448 558 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DGCR6Q14129 220 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 NOL9Q5SY16 702 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 REP15Q6BDI9 236 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 ANKRD46Q86W74 232 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 PDSS2Q86YH6 399 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CCDC117Q8IWD4 279 aaPredicted RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 GPR21Q99679 349 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 MRPL57Q9BQC6 102 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 DNAJC28Q9NX36 388 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 PCDHB9Q9Y5E1 797 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 LINC00854A0A1B0GVQ3 168 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 NIPSNAP2O75323 286 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GOT2P00505 430 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 SERPINF2P08697 491 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 PSMA4P25789 261 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 GKP32189 559 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DAB2P98082 770 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 ENPEPQ07075 957 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 MADCAM1Q13477 382 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GRB7Q14451 532 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 PAQR3Q6TCH7 311 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 SH2D5Q6ZV89 423 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CENPLQ8N0S6 344 aaPredicted RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 TTC30BQ8N4P2 665 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CLDN19Q8N6F1 224 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CALML6Q8TD86 181 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 ARHGAP39Q9C0H5 1083 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CCSER2Q9H7U1 834 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GALPQ9UBC7 116 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 RGS17Q9UGC6 210 aaPredicted RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 CDH9Q9ULB4 789 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 POLR2AP24928 1970 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 C1orf232A0A0U1RR37 186 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 SMIM35A0A1B0GVV1 85 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CDC7O00311 574 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 RBP1P09455 135 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CYP4B1P13584 511 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GLDCP23378 1020 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CRABP2P29373 138 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 ALDH4A1P30038 563 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 GDF5P43026 501 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CDKN1CP49918 316 aaPredicted RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 DGKQP52824 942 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CDKL1Q00532 357 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 MAP2K5Q13163 448 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 MAPRE2Q15555 327 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 CARTPTQ16568 116 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 AGMOQ6ZNB7 445 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 TOP6BLQ8N6T0 577 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 KLHL32Q96NJ5 620 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 SYT17Q9BSW7 474 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 FAM192AQ9GZU8 254 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DRC3Q9H069 523 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 WDR6Q9NNW5 1121 aaKnown RBP11.95□□□□□ -0.5
USP1-201ENST00000339950 ENTPD7Q9NQZ7 604 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DNAJB4Q9UDY4 337 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 VPS28Q9UK41 221 aa11.95□□□□□ -0.5
USP1-201ENST00000339950 DNAJC25-GNG10A0A024R161 153 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 CCDC162PA2VCL2 907 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 CPOXP36551 454 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 MTPNP58546 118 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 LAPTM5Q13571 262 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 INPP5AQ14642 412 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 MAPK11Q15759 364 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 ATP6AP1LQ52LC2 224 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 AAGABQ6PD74 315 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 RNF111Q6ZNA4 994 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 PIWIL4Q7Z3Z4 852 aaKnown RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 KCTD14Q9BQ13 255 aaPredicted RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 CASS4Q9NQ75 786 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 USP22Q9UPT9 525 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 TRPV2Q9Y5S1 764 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 HS3ST4Q9Y661 456 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 F5H5T6 163 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 TRIM38O00635 465 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 CD3EAPO15446 510 aaKnown RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 ZNF682O95780 498 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 FOXA1P55317 472 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 CCL23P55773 120 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 PRSS55Q6UWB4 352 aaPredicted RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 MICAL3Q7RTP6 2002 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 FAM126BQ8IXS8 530 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 PNPT1Q8TCS8 783 aaKnown RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 PPP1R10Q96QC0 940 aaKnown RBP11.94□□□□□ -0.5
USP1-201ENST00000339950 SLC29A1Q99808 456 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 KATNAL1Q9BW62 490 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 AKTIPQ9H8T0 292 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 POLR1BQ9H9Y6 1135 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 PALMDQ9NP74 551 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 SPAG4Q9NPE6 437 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 NMRK2Q9NPI5 230 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 ABCC13Q9NSE7 274 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 LIMD1Q9UGP4 676 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 BAG5Q9UL15 447 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 SORCS3Q9UPU3 1222 aa11.94□□□□□ -0.5
USP1-201ENST00000339950 MYO10Q9HD67 2058 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms