RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DENND2CQ68D51 928 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 CRTC1Q6UUV9 634 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 MACC1Q6ZN28 852 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 CCDC112Q8NEF3 446 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 FUBP1Q96AE4 644 aaKnown RBP15.84■□□□□ 0.13
CLN3-201ENST00000333496 TEKT5Q96M29 485 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 SLC25A51Q9H1U9 297 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 FTSJ1Q9UET6 329 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 SCN8AQ9UQD0 1980 aa15.84■□□□□ 0.13
CLN3-201ENST00000333496 MYLKQ15746 1914 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 PSMD11O00231 422 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 TRIM38O00635 465 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 HYAL3O43820 417 aaPredicted RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 MT-CYBP00156 380 aaPredicted RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 JUNDP17535 347 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 NFKBIAP25963 317 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 TRIM23P36406 574 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 ETV3P41162 512 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 EPHB1P54762 984 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 PTSQ03393 145 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 NOMO1Q15155 1222 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 LRRC66Q68CR7 880 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 ESRP1Q6NXG1 681 aaKnown RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 RFLNAQ6ZTI6 216 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 Q6ZVL8 140 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 TECPR1Q7Z6L1 1165 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 RAB44Q7Z6P3 723 aaPredicted RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 SYCE1Q8N0S2 351 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 RBFAQ8N0V3 343 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 RNF10Q8N5U6 811 aaKnown RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 LPCAT1Q8NF37 534 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 SPATA22Q8NHS9 363 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 DTD2Q96FN9 168 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 CNDP2Q96KP4 475 aaKnown RBP15.83■□□□□ 0.13
CLN3-201ENST00000333496 TRIB3Q96RU7 358 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 C10orf88Q9H8K7 445 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 GLOD4Q9HC38 313 aa15.83■□□□□ 0.13
CLN3-201ENST00000333496 CAPN8A6NHC0 703 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ANKRD66B4E2M5 251 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ENC1O14682 589 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 LDOC1O95751 146 aaPredicted RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 RPL26P61254 145 aaKnown RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 DNAJC3Q13217 504 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ZNF211Q13398 564 aaPredicted RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 XRCC4Q13426 336 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ARHGEF7Q14155 803 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 NFATC4Q14934 902 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 CDKN3Q16667 212 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 QPCTQ16769 361 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 KCTD16Q68DU8 428 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 PNCKQ6P2M8 343 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 NDUFAF2Q8N183 169 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 CHCHD4Q8N4Q1 142 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ZNF548Q8NEK5 533 aaPredicted RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 OR4C6Q8NH72 309 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ACTL9Q8TC94 416 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ADAMTS14Q8WXS8 1223 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 NUS1Q96E22 293 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 HES6Q96HZ4 224 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 QKIQ96PU8 341 aaKnown RBP eCLIP15.83■□□□□ 0.12
CLN3-201ENST00000333496 LYSMD1Q96S90 227 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 SCNM1Q9BWG6 230 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 ANGPTL2Q9UKU9 493 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 GUCA1BQ9UMX6 200 aa15.83■□□□□ 0.12
CLN3-201ENST00000333496 RPL26L1Q9UNX3 145 aaKnown RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 APOBEC2Q9Y235 224 aaKnown RBP15.83■□□□□ 0.12
CLN3-201ENST00000333496 ARHGEF17Q96PE2 2063 aaPredicted RBP15.82■□□□□ 0.12
CLN3-201ENST00000333496 ZFC3H1O60293 1989 aaKnown RBP15.82■□□□□ 0.12
CLN3-201ENST00000333496 AKAP13Q12802 2813 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 MIF4GDA9UHW6 222 aaKnown RBP15.82■□□□□ 0.12
CLN3-201ENST00000333496 HACD1B0YJ81 288 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 SCAMP1O15126 338 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 FFAR2O15552 330 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 SIGLEC6O43699 453 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 TRIM16O95361 564 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 C1SP09871 688 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 CA4P22748 312 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 OTUD4Q01804 1114 aaKnown RBP15.82■□□□□ 0.12
CLN3-201ENST00000333496 PROX2Q3B8N5 592 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 PHACTR4Q8IZ21 702 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 ZNF567Q8N184 647 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 HTR3CQ8WXA8 447 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 LGR4Q9BXB1 951 aa15.82■□□□□ 0.12
CLN3-201ENST00000333496 BPTFQ12830 3046 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 TMEM202A6NGA9 273 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 H3BM21 787 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 MTSS1O43312 755 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 KRT86O43790 486 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 GCATO75600 419 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 CLDN7O95471 211 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 ZNF30P17039 623 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 RBL1P28749 1068 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 STC1P52823 247 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 PPARDQ03181 441 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 GALNT3Q14435 633 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 SLC14A2Q15849 920 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 ALG11Q2TAA5 492 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 ENPP7Q6UWV6 458 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 KDELC2Q7Z4H8 507 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 UBL4BQ8N7F7 174 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms