RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IDH2P48735 452 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 PRKG2Q13237 762 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MSLNQ13421 630 aaPredicted RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 NOMO1Q15155 1222 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 SAMD4BQ5PRF9 694 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 IRAK1BP1Q5VVH5 260 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 PLD5Q8N7P1 536 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 TRIM63Q969Q1 353 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 RCN3Q96D15 328 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 KLHL31Q9H511 634 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 SPATA2Q9UM82 520 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 PSMD13Q9UNM6 376 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 FAM187BQ17R55 369 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ATXN7L2Q5T6C5 722 aaPredicted RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 STRADAQ7RTN6 431 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 DQX1Q8TE96 717 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 POLE3Q9NRF9 147 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 NFKBIL1Q9UBC1 381 aaPredicted RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 C9JVG2 144 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 NFKBIEO00221 500 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 MLYCDO95822 493 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 TBX18O95935 607 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CHRNB2P17787 502 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 PBX1P40424 430 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CCDC80Q76M96 950 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 TAC4Q86UU9 113 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 DBF4BQ8NFT6 615 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 OSCP1Q8WVF1 389 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 NXNL1Q96CM4 212 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 REXO5Q96IC2 774 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 HBEGFQ99075 208 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 AARSD1Q9BTE6 412 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 WDR55Q9H6Y2 383 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 REEP1Q9H902 201 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 VWA7Q9Y334 891 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 TIMM22Q9Y584 194 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 KNDC1Q76NI1 1749 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 VIRMAQ69YN4 1812 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 A0A1W2PQ67 120 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 GRM6O15303 877 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 SGTAO43765 313 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CDKN2BP42772 138 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 NUP107P57740 925 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 JAG1P78504 1218 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 SRSF11Q05519 484 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 FAM20CQ8IXL6 584 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 OR4A15Q8NGL6 344 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 ZNF483Q8TF39 744 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 ASB2Q96Q27 587 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 HTATIP2Q9BUP3 242 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 MAT2BQ9NZL9 334 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 AHCYL1O43865 530 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 SNX3O60493 162 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 PAICSP22234 425 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 TEX44Q53QW1 395 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 HECTD2Q5U5R9 776 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 GK5Q6ZS86 529 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 UTS2BQ765I0 119 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 TOR4AQ9NXH8 423 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 STXBP5LQ9Y2K9 1186 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 OR6A2O95222 327 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 ZBTB48P10074 688 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 NR2F1P10589 423 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 GJA1P17302 382 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 NMBRP28336 390 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 PPIDQ08752 370 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 KRR1Q13601 381 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 SF1Q15637 639 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 WASHC2DQ5SRD0 308 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 SPPL2BQ8TCT7 592 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 RNFT2Q96EX2 444 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 GINS4Q9BRT9 223 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 ANAPC2Q9UJX6 822 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 ADSSP30520 456 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 C21orf59P57076 290 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 JAM2P57087 298 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 SQLEQ14534 574 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 C16orf62Q7Z3J2 963 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 AMIGO2Q86SJ2 522 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 FAM129CQ86XR2 697 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CLVS1Q8IUQ0 354 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 CFAP206Q8IYR0 622 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 FBXO22Q8NEZ5 403 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 WDR60Q8WVS4 1066 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 COPS8Q99627 209 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 REXO4Q9GZR2 422 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 EXO5Q9H790 373 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 DUS2Q9NX74 493 aaKnown RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 GTF2IRD1Q9UHL9 959 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 KLF15Q9UIH9 416 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CICQ96RK0 1608 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 KPNA4O00629 521 aaPredicted RBP10.18□□□□□ -0.78
CHD3-201ENST00000330494 CFHP08603 1231 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 CYP4B1P13584 511 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 LAG3P18627 525 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 AQP1P29972 269 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 ZNF618Q5T7W0 954 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 C12orf56Q8IXR9 622 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 BPIFB6Q8NFQ5 453 aa10.18□□□□□ -0.78
CHD3-201ENST00000330494 PSMG2Q969U7 264 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms