RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C2orf49Q9BVC5 232 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PAPSS2O95340 614 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 FADS2O95864 444 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ACOT1Q86TX2 421 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 SLC4A11Q8NBS3 891 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 KLHL5Q96PQ7 755 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 RC3H2Q9HBD1 1191 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 KANSL3Q9P2N6 904 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 OGDHLQ9ULD0 1010 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 PLLPQ9Y342 182 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF451Q9Y4E5 1061 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CYP7B1O75881 506 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ANGPTL1O95841 491 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 RARAP10276 462 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ETS2P15036 469 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 EPHA10Q5JZY3 1008 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 PSTKQ8IV42 348 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZMYM5Q9UJ78 669 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CYB561D2O14569 222 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 C9P02748 559 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CKMP06732 381 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZDHHC20Q5W0Z9 365 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 FSTL5Q8N475 847 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 OR2L5Q8NG80 312 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ALG9Q9H6U8 611 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ETNK2Q9NVF9 386 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 RBBP4Q09028 425 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF567Q8N184 647 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 DNAJB14Q8TBM8 379 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM169Q96HH4 297 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CXorf21Q9HAI6 301 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 POPDC2Q9HBU9 364 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 UXTQ9UBK9 157 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF639Q9UID6 485 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ROBO3Q96MS0 1386 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ACSL4O60488 711 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ALDH4A1P30038 563 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 EPHB3P54753 998 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CBWD1Q9BRT8 395 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 SEMA6BQ9H3T3 888 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 RBMXL2O75526 392 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 MAGEA12P43365 314 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 NAGLUP54802 743 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 BOP1Q14137 746 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZIK1Q3SY52 487 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ATG9AQ7Z3C6 839 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 TTLL2Q9BWV7 592 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 NFKBIZQ9BYH8 718 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 MTMR10Q9NXD2 777 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CBX4O00257 560 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 GCATO75600 419 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CLPXO76031 633 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CTDNEP1O95476 244 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 HMBSP08397 361 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 NR2F1P10589 423 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF143P52747 638 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 MAZP56270 477 aaKnown RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM110Q86TL2 294 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 GPR180Q86V85 440 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 HDDC3Q8N4P3 179 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF420Q8TAQ5 688 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-201ENST00000328333 PIM2Q9P1W9 311 aa14.29□□□□□ -0.12
COL7A1-201ENST00000328333 CABIN1Q9Y6J0 2220 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 AZIN1O14977 448 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 SLC6A3Q01959 620 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TROAPQ12815 778 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 CBLBQ13191 982 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 HSD17B12Q53GQ0 312 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 CPTPQ5TA50 214 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ZPBP2Q6X784 338 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TOP1MTQ969P6 601 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 PDE10AQ9Y233 779 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 PCDHGB1Q9Y5G3 927 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 B3GAT3O94766 335 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 HGFP14210 728 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 FOXR1Q6PIV2 292 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 SLC5A5Q92911 643 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 C1GALT1C1Q96EU7 318 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF285Q96NJ3 590 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF446Q9NWS9 450 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RFXANKO14593 260 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ITGA2BP08514 1039 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 SLC7A2P52569 658 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 FOXO4P98177 505 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 SLC25A25Q6KCM7 469 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 GNRH1P01148 92 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 LTFP02788 710 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 MYBL2P10244 700 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TBX4P57082 545 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 MVKQ03426 396 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RNF44Q7L0R7 432 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TIGD4Q8IY51 512 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM86AQ8N2M4 240 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 CPNE2Q96FN4 548 aaPredicted RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 SYNDIG1Q9H7V2 258 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 PTBP2Q9UKA9 531 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ECT2LQ008S8 904 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 GRB10Q13322 594 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RTL4Q6ZR62 310 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 LAPTM4BQ86VI4 370 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms