RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 USP45Q70EL2 814 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 HSD11B1LQ7Z5J1 315 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 LSMEM2Q8N112 164 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 SDR16C5Q8N3Y7 309 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 SPOCK2Q92563 424 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 ZNF578Q96N58 590 aaPredicted RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 ZNF670Q9BS34 389 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 POLR1EQ9GZS1 481 aaKnown RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 ZNHIT6Q9NWK9 470 aaKnown RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 RABGEF1Q9UJ41 708 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 RAI2Q9Y5P3 530 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 B4DGG1 531 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 AKR1B10O60218 316 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 KRT7P08729 469 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 MYCLP1P12525 358 aaPredicted RBP19.53■□□□□ 0.72
LIME1-201ENST00000309546 TRIM23P36406 574 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 PAFAH1B3Q15102 231 aaKnown RBP19.53■□□□□ 0.72
LIME1-201ENST00000309546 PDK2Q15119 407 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 RAET1GQ6H3X3 334 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 TSPAN33Q86UF1 283 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 HEATR4Q86WZ0 1026 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 LRRC49Q8IUZ0 686 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 OR8K1Q8NGG5 319 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 WDR48Q8TAF3 677 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 LRRN4Q8WUT4 740 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 DTD2Q96FN9 168 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 TMEM168Q9H0V1 697 aa19.53■□□□□ 0.72
LIME1-201ENST00000309546 PHPT1Q9NRX4 125 aaPredicted RBP19.53■□□□□ 0.72
LIME1-201ENST00000309546 PRSS38A1L453 326 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 PDE2AO00408 941 aaPredicted RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 TNFRSF10CO14798 259 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 PDHA1P08559 390 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 HOXC4P09017 264 aaPredicted RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 TPM1P09493 284 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 DSC2Q02487 901 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 MESDQ14696 234 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 IFI16Q16666 785 aaKnown RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 SKOR2Q2VWA4 1001 aaPredicted RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 SOWAHCQ53LP3 525 aaPredicted RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 Q6ZVL8 140 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 MAP7D3Q8IWC1 876 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 SPACA3Q8IXA5 215 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 TEX26Q8N6G2 289 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 ZNF248Q8NDW4 579 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 FAM46DQ8NEK8 389 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 CCL4L1Q8NHW4 92 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 DNAJC7Q99615 494 aa19.52■□□□□ 0.72
LIME1-201ENST00000309546 CARS2Q9HA77 564 aaKnown RBP19.52■□□□□ 0.72
LIME1-201ENST00000309546 A0A0U1RQS6 177 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 A0A1W2PNU3 283 aaPredicted RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 PSMD11O00231 422 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 DXOO77932 396 aaKnown RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 RPLP0P05388 317 aaKnown RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 RBMS1P29558 406 aaKnown RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 PDX1P52945 283 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 EPHB1P54762 984 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 GBE1Q04446 702 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 TSR1Q2NL82 804 aaKnown RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 SFTPA2Q8IWL1 248 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 NDUFAF2Q8N183 169 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 RNF214Q8ND24 703 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 PIH1D2Q8WWB5 315 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 GRAMD1AQ96CP6 724 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 SCRN2Q96FV2 425 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 FCRL3Q96P31 734 aaPredicted RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 SMIM14Q96QK8 99 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 GFM1Q96RP9 751 aaKnown RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 MCCC1Q96RQ3 725 aaPredicted RBP19.51■□□□□ 0.71
LIME1-201ENST00000309546 DPEP2Q9H4A9 486 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 ASCL3Q9NQ33 180 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 THSD1Q9NS62 852 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 HAUS2Q9NVX0 235 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 RBM22Q9NW64 420 aaKnown RBP eCLIP19.51■□□□□ 0.71
LIME1-201ENST00000309546 KCTD5Q9NXV2 234 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 CD84Q9UIB8 345 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 LCMT1Q9UIC8 334 aa19.51■□□□□ 0.71
LIME1-201ENST00000309546 ARHGEF17Q96PE2 2063 aaPredicted RBP19.5■□□□□ 0.71
LIME1-201ENST00000309546 SSU72P8A0A1W2PR75 194 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 PMS2P1A4D2B8 440 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 MATN3O15232 486 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 TMEM253P0C7T8 217 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 KRT10P13645 584 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 GNPDA1P46926 289 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 ERVPABLB-1P60509 514 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 CCL7P80098 99 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 CDK3Q00526 305 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 TLE3Q04726 772 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 COL9A2Q14055 689 aaPredicted RBP19.5■□□□□ 0.71
LIME1-201ENST00000309546 ASTE1Q2TB18 679 aaPredicted RBP19.5■□□□□ 0.71
LIME1-201ENST00000309546 LRRC66Q68CR7 880 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 DOK6Q6PKX4 331 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 PQLC3Q8N755 202 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 Q8N9G6 341 aaPredicted RBP19.5■□□□□ 0.71
LIME1-201ENST00000309546 CCNYQ8ND76 341 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 GPR156Q8NFN8 814 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 MAML1Q92585 1016 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 FAF2Q96CS3 445 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 ZNF830Q96NB3 372 aaPredicted RBP19.5■□□□□ 0.71
LIME1-201ENST00000309546 TEX101Q9BY14 249 aa19.5■□□□□ 0.71
LIME1-201ENST00000309546 TSPY26PQ9H489 355 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms